RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 NTN1O95631 604 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 IGF2P01344 180 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 CD300LDQ6UXZ3 194 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 MEX3BQ6ZN04 569 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 ZNF561Q8N587 486 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 OR5M9Q8NGP3 310 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 PCDHGA9Q9Y5G4 932 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 NCOR1O75376 2440 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 A0A1W2PQF6 199 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 P2RY10O00398 339 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 NMBP08949 121 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 CT62P0C5K7 136 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 MALLQ13021 153 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 CLEC1AQ8NC01 280 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 PTP4A1Q93096 173 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 PELI1Q96FA3 418 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 BORCS8Q96FH0 119 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 ARHGDIGQ99819 225 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 CTSFQ9UBX1 484 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 CHRNA9Q9UGM1 479 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 FBXL4Q9UKA2 621 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 ZNF346Q9UL40 294 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 PIAS2O75928 621 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 SDHAP31040 664 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 ZIC1Q15915 447 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 ETFDHQ16134 617 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 DCXRQ7Z4W1 244 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 OR1J2Q8NGS2 313 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 SYT3Q9BQG1 590 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 A0A0B4J293 547 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 ZNF705FA8MVS1 300 aaPredicted RBP14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 ZNF705DP0CH99 300 aaPredicted RBP14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 ZNF705BP0CI00 300 aaPredicted RBP14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 SEZ6L2Q6UXD5 910 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 LINC00696Q6ZRV3 163 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 HGDQ93099 445 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 A0A1W2PNR3 127 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 LILRA5A6NI73 299 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 HMSDA8MTL9 139 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 DCTN6O00399 190 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 RPL27P61353 136 aaKnown RBP14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 C2orf76Q3KRA6 126 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 HIST2H3PS2Q5TEC6 136 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 ADGRE4PQ86SQ3 457 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 RPS19BP1Q86WX3 136 aaKnown RBP14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 MARVELD3Q96A59 401 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 MVB12AQ96EY5 273 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 ZNF75AQ96N20 296 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 KLHL13Q9P2N7 655 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 AVPR2P30518 371 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 ACSM1Q08AH1 577 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 ELFN2Q5R3F8 820 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 C11orf87Q6NUJ2 197 aa14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 H1FNTQ75WM6 255 aaPredicted RBP14.75□□□□□ -0.05
CCDC88B-209ENST00000494080 A0A087WZY1 265 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 CCDC163A0A0D9SF12 145 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 NUDT19A8MXV4 375 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 SLC35D3Q5M8T2 416 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 SLC22A25Q6T423 547 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 UQCC3Q6UW78 93 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 ZNF611Q8N823 705 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 ZFP64Q9NPA5 681 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 ACAD8Q9UKU7 415 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 EXOGQ9Y2C4 368 aaKnown RBP14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 FBXO7Q9Y3I1 522 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 NPIPB8E9PQR5 432 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 PTAFRP25105 342 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 ARG2P78540 354 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 C5orf46Q6UWT4 87 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 Q6ZRG5 221 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 GALNT16Q8N428 558 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 RHOFQ9HBH0 211 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 OPN4Q9UHM6 478 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 NXT1Q9UKK6 140 aaKnown RBP14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 IGHV1OR15-9A0A0B4J2B8 117 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 NKX2-2O95096 273 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 POU2F2P09086 479 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 MRPL49Q13405 166 aaKnown RBP14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 IFI44Q8TCB0 444 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 GPA33Q99795 319 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 PLEKHJ1Q9NW61 149 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 MED29Q9NX70 200 aa14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 TDRD6O60522 2096 aaKnown RBP14.74□□□□□ -0.05
CCDC88B-209ENST00000494080 XRCC3O43542 346 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 NME2P1O60361 137 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 MPC2O95563 127 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 MT-ATP6P00846 226 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 ZGLP1P0C6A0 271 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 OMGP23515 440 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 RPL19P84098 196 aaKnown RBP14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 FABP9Q0Z7S8 132 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 PRTGQ2VWP7 1150 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 LAMTOR1Q6IAA8 161 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 HAS2Q92819 552 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 EXOSC3Q9NQT5 275 aaKnown RBP14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 FAM96BQ9Y3D0 163 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 MBTPS2O43462 519 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 GCM2O75603 506 aaPredicted RBP14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 PI3P19957 117 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 SERPINA2P20848 420 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms