RNA–Protein interactions for RNA: ENST00000493177.1

MSH6-208, Transcript of mutS homolog 6, human

TSL 3

Gene MSH6, Length 813 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSH6-208	ENST00000493177	GNG8	Q9UK08	70 aa		11.65	□□□□□ -0.54
MSH6-208	ENST00000493177	RNF115	Q9Y4L5	304 aa		11.65	□□□□□ -0.54
MSH6-208	ENST00000493177		A0A087WXM4	84 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	MAGEA13P	A6NCF6	341 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	METTL15	A6NJ78	407 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	PRR32	B1ATL7	298 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177		F5H5K5	113 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177		M0R1B8	84 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	MRPS14	O60783	128 aa	Known RBP	11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	RPP14	O95059	124 aa	Known RBP	11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	PTH	P01270	115 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	HTR1A	P08908	422 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	TACSTD2	P09758	323 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	LIMS3	P0CW19	117 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	LIMS4	P0CW20	117 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	CCNO	P22674	350 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	APEX1	P27695	318 aa	Known RBP	11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	GDI2	P50395	445 aa	Known RBP	11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	RIDA	P52758	137 aa	Known RBP	11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	GRB2	P62993	217 aa	Known RBP	11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	NKX6-1	P78426	367 aa	Predicted RBP	11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	GALK2	Q01415	458 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	ECH1	Q13011	328 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	OR2G6	Q5TZ20	316 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	ZNF679	Q8IYX0	411 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	OR10S1	Q8NGN2	331 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	TMEM171	Q8WVE6	324 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	SPRYD4	Q8WW59	207 aa	Predicted RBP	11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	SPTSSA	Q969W0	71 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	MS4A3	Q96HJ5	214 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	C4orf36	Q96KX1	117 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	COQ7	Q99807	217 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	MND1	Q9BWT6	205 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	CDCA4	Q9BXL8	241 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	MOV10	Q9HCE1	1003 aa	Known RBP	11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	PNRC2	Q9NPJ4	139 aa	Known RBP	11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	FBXL3	Q9UKT7	428 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	CAB39	Q9Y376	341 aa	Predicted RBP	11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	LRP12	Q9Y561	859 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	N6AMT1	Q9Y5N5	214 aa		11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	RAI1	Q7Z5J4	1906 aa	Predicted RBP	11.64	□□□□□ -0.55
MSH6-208	ENST00000493177	CSMD1	Q96PZ7	3565 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	TMEM129	A0AVI4	362 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	OR6C6	A6NF89	314 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	SYNGR3	O43761	229 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	ZNF254	O75437	659 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	SULT1C4	O75897	302 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	PLAU	P00749	431 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	MT-ND5	P03915	603 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	CELA3B	P08861	270 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	ATP6V1B1	P15313	513 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	PAX7	P23759	505 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	STOM	P27105	288 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	OPRL1	P41146	370 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	PRKX	P51817	358 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	OR12D2	P58182	307 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	TBC1D28	Q2M2D7	210 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	CDON	Q4KMG0	1287 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	RNLS	Q5VYX0	342 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	SSX8	Q7RTT4	187 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	SPART	Q8N0X7	666 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	ZNF283	Q8N7M2	679 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	NANOGP1	Q8N7R0	232 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	CPEB3	Q8NE35	698 aa	Known RBP	11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	SLC30A7	Q8NEW0	376 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	GATAD2B	Q8WXI9	593 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	SLC7A6	Q92536	515 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	AKAP1	Q92667	903 aa	Known RBP eCLIP	11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	PERP	Q96FX8	193 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	KCNJ15	Q99712	375 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	ISG20L2	Q9H9L3	353 aa	Known RBP	11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	CDH20	Q9HBT6	801 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	DDX28	Q9NUL7	540 aa	Known RBP	11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	ACOXL	Q9NUZ1	547 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	MRM2	Q9UI43	246 aa	Known RBP	11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	GTF2A1L	Q9UNN4	478 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	CSMD2	Q7Z408	3487 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	AKAP6	Q13023	2319 aa		11.63	□□□□□ -0.55
MSH6-208	ENST00000493177	LRBA	P50851	2863 aa		11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	ABCA4	P78363	2273 aa		11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	C5orf49	A4QMS7	147 aa		11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	SERPINA5	P05154	406 aa		11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	ANXA2	P07355	339 aa	Known RBP	11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	DBH	P09172	617 aa		11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	COX5B	P10606	129 aa		11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	CCL2	P13500	99 aa		11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	ZNF14	P17017	642 aa	Predicted RBP	11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	LOX	P28300	417 aa	Predicted RBP	11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	PSMB10	P40306	273 aa		11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	SLC6A9	P48067	706 aa		11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	CX3CR1	P49238	355 aa		11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	GBX2	P52951	348 aa	Predicted RBP	11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	TPTE	P56180	551 aa		11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	WNT4	P56705	351 aa		11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	ROM1	Q03395	351 aa		11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	IRF3	Q14653	427 aa		11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	MED22	Q15528	200 aa		11.62	□□□□□ -0.55
MSH6-208	ENST00000493177		Q5PR19	223 aa		11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	NCMAP	Q5T1S8	102 aa		11.62	□□□□□ -0.55
MSH6-208	ENST00000493177	C1QTNF12	Q5T7M4	302 aa		11.62	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms