RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 SLC16A1P53985 500 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 H3F3AP84243 136 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 DUSP5Q16690 384 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 IQCJQ1A5X6 159 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 AMZ1Q400G9 498 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 NKAIN1Q4KMZ8 207 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 COA6Q5JTJ3 125 aaKnown RBP4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 PLEKHS1Q5SXH7 462 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 NCR3LG1Q68D85 454 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 LEMD1Q68G75 181 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 ETFRF1Q6IPR1 90 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 CD300LGQ6UXG3 332 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 LBX2Q6XYB7 198 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 MTSS1LQ765P7 747 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 P4HA3Q7Z4N8 544 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 NRMQ8IXM6 262 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 SLC35G3Q8N808 338 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 NKAIN3Q8N8D7 197 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 ARL14EPQ8N8R7 260 aaPredicted RBP4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 DTWD2Q8NBA8 298 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 RCBTB1Q8NDN9 531 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 OR14K1Q8NGZ2 314 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 SFXN5Q8TD22 340 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 RPS4Y2Q8TD47 263 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 RNASE8Q8TDE3 154 aaKnown RBP4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 MRGPRDQ8TDS7 321 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 SKA2Q8WVK7 121 aaPredicted RBP4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 RAB39BQ96DA2 213 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 OTUB2Q96DC9 234 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 SEH1LQ96EE3 360 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 CCDC140Q96MF4 163 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 DIRC2Q96SL1 478 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 PRRT1Q99946 306 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 HCAR1Q9BXC0 346 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 DPH1Q9BZG8 443 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 OR8D2Q9GZM6 311 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 SLC25A18Q9H1K4 315 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 NELFAQ9H3P2 528 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 DPEP2Q9H4A9 486 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 LPAR2Q9HBW0 351 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 SLC2A8Q9NY64 477 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 B4GALT6Q9UBX8 382 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 DKKL1Q9UK85 242 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 SLC13A4Q9UKG4 626 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 SH2B3Q9UQQ2 575 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 ZFP30Q9Y2G7 519 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 PUS1Q9Y606 427 aaKnown RBP eCLIP4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 HS3ST3B1Q9Y662 390 aa4.29□□□□□ -1.72
SNRNP40-206ENST00000489853 PHIPQ8WWQ0 1821 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 TLCD2A6NGC4 264 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 ZNF727A8MUV8 499 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 B4DEV8 164 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 ZNF736B4DX44 427 aaPredicted RBP4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 NDUFS8O00217 210 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 B4GALT2O60909 372 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 ZNF432O94892 652 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 TXNDC12O95881 172 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 KLK1P06870 262 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 MRPL3P09001 348 aaKnown RBP4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 DANCRP0C864 163 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 ZNF888P0CJ79 500 aaPredicted RBP4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 BCKDHBP21953 392 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 LMO1P25800 156 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 CFPP27918 469 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 CCKARP32238 428 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 CSNK1DP48730 415 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 ARRB1P49407 418 aaPredicted RBP4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 PLXNA3P51805 1871 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 KLF3P57682 345 aaPredicted RBP4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 SP3Q02447 781 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 PAX5Q02548 391 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 EGR3Q06889 387 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 RASGEF1BQ0VAM2 473 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 PPP1R1AQ13522 171 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 ELOCQ15369 112 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 TMEM241Q24JQ0 296 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 RPL7L1Q6DKI1 246 aaKnown RBP4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 FBXO46Q6PJ61 603 aaPredicted RBP4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 C16orf54Q6UWD8 224 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 LINC00114Q6XXX2 140 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 MED25Q71SY5 747 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 KCTD9Q7L273 389 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 SSX7Q7RTT5 188 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 ZNF280BQ86YH2 543 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 GCNT2Q8N0V5 402 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 OR2L13Q8N349 312 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 Q8N3U1 123 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 ARL14Q8N4G2 192 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 SUMF2Q8NBJ7 301 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 AGBL5Q8NDL9 886 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 PLPP5Q8NEB5 264 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 LFNGQ8NES3 379 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 OR4S1Q8NGB4 309 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 SUN3Q8TAQ9 357 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 ZCCHC10Q8TBK6 192 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 SMARCD2Q92925 531 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 FBXO32Q969P5 355 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 CMBLQ96DG6 245 aa4.28□□□□□ -1.72
SNRNP40-206ENST00000489853 INTS14Q96SY0 518 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms