RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 IQCF6A8MYZ5 107 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 H7C1C5 153 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 HLA-DPB1P04440 258 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 DBHP09172 617 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 MTPNP58546 118 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 ARF6P62330 175 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 LCN6P62502 163 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 AQP6Q13520 282 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 SELPLGQ14242 412 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 KCNJ8Q15842 424 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 Q6ZTK2 550 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 PDZD9Q8IXQ8 264 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 LRRC75AQ8NAA5 344 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 Q8TCH9 128 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 ERGIC1Q969X5 290 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 PPP1R14AQ96A00 147 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 EBF4Q9BQW3 602 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 CCDC28BQ9BUN5 200 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 POLR2J2Q9GZM3 115 aaKnown RBP14.19□□□□□ -0.14
VIM-204ENST00000478746 POLR2J3Q9H1A7 115 aaKnown RBP14.19□□□□□ -0.14
VIM-204ENST00000478746 CTSZQ9UBR2 303 aa14.19□□□□□ -0.14
VIM-204ENST00000478746 BTBD17A6NE02 478 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 OR6C6A6NF89 314 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 SHOX2O60902 331 aaPredicted RBP14.18□□□□□ -0.14
VIM-204ENST00000478746 FAM20BO75063 409 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 IFI30P13284 250 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 TNFRSF1BP20333 461 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 FUT4P22083 530 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 TGFBR2P37173 567 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 COX10Q12887 443 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 MAB21L1Q13394 359 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 SFRP4Q6FHJ7 346 aaPredicted RBP14.18□□□□□ -0.14
VIM-204ENST00000478746 DHDDSQ86SQ9 333 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 CELF2-AS1Q8N7Q2 184 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 OR51A7Q8NH64 312 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 LRRC8CQ8TDW0 803 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 APOBEC3DQ96AK3 386 aaPredicted RBP14.18□□□□□ -0.14
VIM-204ENST00000478746 BPIFA2Q96DR5 249 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 C7orf26Q96N11 449 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 CGREF1Q99674 301 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 RASSF4Q9H2L5 321 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 MED4Q9NPJ6 270 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 UFSP2Q9NUQ7 469 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 NOTCH3Q9UM47 2321 aa14.18□□□□□ -0.14
VIM-204ENST00000478746 A0A1B0GWJ7 208 aa14.17□□□□□ -0.14
VIM-204ENST00000478746 ELOVL7A1L3X0 281 aa14.17□□□□□ -0.14
VIM-204ENST00000478746 HTR3EA5X5Y0 456 aa14.17□□□□□ -0.14
VIM-204ENST00000478746 GPR37O15354 613 aa14.17□□□□□ -0.14
VIM-204ENST00000478746 ADAM20O43506 726 aa14.17□□□□□ -0.14
VIM-204ENST00000478746 CRYBA2P53672 197 aa14.17□□□□□ -0.14
VIM-204ENST00000478746 HERPUD1Q15011 391 aa14.17□□□□□ -0.14
VIM-204ENST00000478746 CCDC92Q53HC0 331 aaPredicted RBP14.17□□□□□ -0.14
VIM-204ENST00000478746 CLEC12AQ5QGZ9 265 aa14.17□□□□□ -0.14
VIM-204ENST00000478746 CCDC80Q76M96 950 aa14.17□□□□□ -0.14
VIM-204ENST00000478746 MICU2Q8IYU8 434 aa14.17□□□□□ -0.14
VIM-204ENST00000478746 GALNT4Q8N4A0 578 aa14.17□□□□□ -0.14
VIM-204ENST00000478746 PIP4P2Q8N4L2 257 aa14.17□□□□□ -0.14
VIM-204ENST00000478746 BOLLQ8N9W6 283 aaKnown RBP14.17□□□□□ -0.14
VIM-204ENST00000478746 OR10A6Q8NH74 314 aa14.17□□□□□ -0.14
VIM-204ENST00000478746 HCAR1Q9BXC0 346 aa14.17□□□□□ -0.14
VIM-204ENST00000478746 KAT8Q9H7Z6 458 aaKnown RBP14.17□□□□□ -0.14
VIM-204ENST00000478746 WDR76Q9H967 626 aa14.17□□□□□ -0.14
VIM-204ENST00000478746 RNF7Q9UBF6 113 aa14.17□□□□□ -0.14
VIM-204ENST00000478746 CAB39Q9Y376 341 aaPredicted RBP14.17□□□□□ -0.14
VIM-204ENST00000478746 TRAV27A0A087WT01 109 aa14.16□□□□□ -0.14
VIM-204ENST00000478746 LGALS8O00214 317 aa14.16□□□□□ -0.14
VIM-204ENST00000478746 MPPED2Q15777 294 aa14.16□□□□□ -0.14
VIM-204ENST00000478746 OTPQ5XKR4 325 aa14.16□□□□□ -0.14
VIM-204ENST00000478746 SLC35E4Q6ICL7 350 aa14.16□□□□□ -0.14
VIM-204ENST00000478746 BTN2A1Q7KYR7 527 aa14.16□□□□□ -0.14
VIM-204ENST00000478746 ECSITQ9BQ95 431 aa14.16□□□□□ -0.14
VIM-204ENST00000478746 RABEP2Q9H5N1 569 aa14.16□□□□□ -0.14
VIM-204ENST00000478746 GRHPRQ9UBQ7 328 aa14.16□□□□□ -0.14
VIM-204ENST00000478746 FBLN5Q9UBX5 448 aa14.16□□□□□ -0.14
VIM-204ENST00000478746 ATPIF1Q9UII2 106 aa14.16□□□□□ -0.14
VIM-204ENST00000478746 VPREB3Q9UKI3 123 aa14.16□□□□□ -0.14
VIM-204ENST00000478746 BAG5Q9UL15 447 aa14.16□□□□□ -0.14
VIM-204ENST00000478746 ANKRD61A6NGH8 418 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 XKRYO14609 159 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 RER1O15258 196 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 NDUFA2O43678 99 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 AHCYL1O43865 530 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 FBP1P09467 338 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 CD200P41217 278 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 OR1E2P47887 323 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 LSM6P62312 80 aaKnown RBP14.15□□□□□ -0.14
VIM-204ENST00000478746 HOXA4Q00056 320 aaPredicted RBP14.15□□□□□ -0.14
VIM-204ENST00000478746 OR8B8Q15620 311 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 VMACQ2NL98 169 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 VAX1Q5SQQ9 334 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 PRAMEF6Q5VXH4 476 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 OAFQ86UD1 273 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 DPP10Q8N608 796 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 NPRL2Q8WTW4 380 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 ZNF583Q96ND8 569 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 RERGLQ9H628 205 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 CNTD2Q9H8S5 307 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 SMURF1Q9HCE7 757 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 NDUFAF1Q9Y375 327 aa14.15□□□□□ -0.14
VIM-204ENST00000478746 TRAV38-1A0A0B4J264 116 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms