RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 OR6N2Q8NGY6 317 aa8.29□□□□□ -1.08
HDAC3-208ENST00000476739 ST7LQ8TDW4 575 aa8.29□□□□□ -1.08
HDAC3-208ENST00000476739 IPCEF1Q8WWN9 437 aaPredicted RBP8.29□□□□□ -1.08
HDAC3-208ENST00000476739 PLEKHA8Q96JA3 519 aa8.29□□□□□ -1.08
HDAC3-208ENST00000476739 INTS14Q96SY0 518 aa8.29□□□□□ -1.08
HDAC3-208ENST00000476739 ATF6BQ99941 703 aa8.29□□□□□ -1.08
HDAC3-208ENST00000476739 RBM4BQ9BQ04 359 aaKnown RBP8.29□□□□□ -1.08
HDAC3-208ENST00000476739 GABARAPL3Q9BY60 117 aa8.29□□□□□ -1.08
HDAC3-208ENST00000476739 HDHD2Q9H0R4 259 aa8.29□□□□□ -1.08
HDAC3-208ENST00000476739 RIBC2Q9H4K1 309 aa8.29□□□□□ -1.08
HDAC3-208ENST00000476739 GSX1Q9H4S2 264 aaPredicted RBP8.29□□□□□ -1.08
HDAC3-208ENST00000476739 MARCH7Q9H992 704 aa8.29□□□□□ -1.08
HDAC3-208ENST00000476739 DYNLRB1Q9NP97 96 aa8.29□□□□□ -1.08
HDAC3-208ENST00000476739 ACANP16112 2415 aa8.29□□□□□ -1.08
HDAC3-208ENST00000476739 RNF223E7ERA6 249 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 E9PQ18 207 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 LYNX1G3V0Z9 82 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 SMAD7O15105 426 aaKnown RBP8.28□□□□□ -1.08
HDAC3-208ENST00000476739 TLX2O43763 284 aaPredicted RBP8.28□□□□□ -1.08
HDAC3-208ENST00000476739 BAG2O95816 211 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 IGHV3-13P01766 116 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 HPXP02790 462 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 LYNX1P0DP58 116 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 PAICSP22234 425 aaKnown RBP8.28□□□□□ -1.08
HDAC3-208ENST00000476739 RBMXP38159 391 aaKnown RBP8.28□□□□□ -1.08
HDAC3-208ENST00000476739 NAA10P41227 235 aaPredicted RBP8.28□□□□□ -1.08
HDAC3-208ENST00000476739 MAGEB1P43366 347 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 PRSS12P56730 875 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 PSG7Q13046 419 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 HNRNPA0Q13151 305 aaKnown RBP8.28□□□□□ -1.08
HDAC3-208ENST00000476739 CBX3Q13185 183 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 APOFQ13790 326 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 EIF2B1Q14232 305 aaKnown RBP8.28□□□□□ -1.08
HDAC3-208ENST00000476739 HLXQ14774 488 aaPredicted RBP8.28□□□□□ -1.08
HDAC3-208ENST00000476739 ZNF718Q3SXZ3 478 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 ZIK1Q3SY52 487 aaPredicted RBP8.28□□□□□ -1.08
HDAC3-208ENST00000476739 AADACL4Q5VUY2 407 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 TCEANCQ8N8B7 351 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 UBE2FQ969M7 185 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 CMBLQ96DG6 245 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 SLAMF6Q96DU3 332 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 IL4I1Q96RQ9 567 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 DCLRE1CQ96SD1 692 aaKnown RBP8.28□□□□□ -1.08
HDAC3-208ENST00000476739 RAB1BQ9H0U4 201 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 ELOVL3Q9HB03 270 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 BARX1Q9HBU1 254 aaPredicted RBP8.28□□□□□ -1.08
HDAC3-208ENST00000476739 DDX28Q9NUL7 540 aaKnown RBP8.28□□□□□ -1.08
HDAC3-208ENST00000476739 USE1Q9NZ43 259 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 PTTG3PQ9NZH4 202 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 PTTG2Q9NZH5 202 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 ATPIF1Q9UII2 106 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 KLHDC2Q9Y2U9 406 aa8.28□□□□□ -1.08
HDAC3-208ENST00000476739 CR1P17927 2039 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 A0A096LNT2 108 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 ZSCAN5BA6NJL1 495 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 PRODHO43272 600 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 NCR1O76036 304 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 MRPL3P09001 348 aaKnown RBP8.27□□□□□ -1.09
HDAC3-208ENST00000476739 SLC2A1P11166 492 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 S100A1P23297 94 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 COL8A2P25067 703 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 GCH1P30793 250 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 OTX1P32242 354 aaPredicted RBP8.27□□□□□ -1.09
HDAC3-208ENST00000476739 MMP15P51511 669 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 ALDH3A2P51648 485 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 BLVRAP53004 296 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 RPS7P62081 194 aaKnown RBP8.27□□□□□ -1.09
HDAC3-208ENST00000476739 NKPD1Q17RQ9 610 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 SNAI3Q3KNW1 292 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 SPRNQ5BIV9 151 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 SLC35D3Q5M8T2 416 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 ARL9Q6T311 187 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 COLCA1Q6ZS62 124 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 TMEM163Q8TC26 289 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 APOBEC3DQ96AK3 386 aaPredicted RBP8.27□□□□□ -1.09
HDAC3-208ENST00000476739 C18orf12Q96KH6 178 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 COX4I2Q96KJ9 171 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 MBOAT4Q96T53 435 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 TEAD3Q99594 435 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 ABHD6Q9BV23 337 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 C1QTNF5Q9BXJ0 243 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 TEX12Q9BXU0 123 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 MSL2Q9HCI7 577 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 CENPMQ9NSP4 180 aa8.27□□□□□ -1.09
HDAC3-208ENST00000476739 C17orf100A8MU93 164 aa8.26□□□□□ -1.09
HDAC3-208ENST00000476739 PRR32B1ATL7 298 aa8.26□□□□□ -1.09
HDAC3-208ENST00000476739 M0R135 149 aa8.26□□□□□ -1.09
HDAC3-208ENST00000476739 SPRY3O43610 288 aa8.26□□□□□ -1.09
HDAC3-208ENST00000476739 LILRA1O75019 489 aa8.26□□□□□ -1.09
HDAC3-208ENST00000476739 IGHV1-46P01743 117 aa8.26□□□□□ -1.09
HDAC3-208ENST00000476739 INHBBP09529 407 aa8.26□□□□□ -1.09
HDAC3-208ENST00000476739 DAOP14920 347 aa8.26□□□□□ -1.09
HDAC3-208ENST00000476739 PRKXP51817 358 aa8.26□□□□□ -1.09
HDAC3-208ENST00000476739 CCL8P80075 99 aa8.26□□□□□ -1.09
HDAC3-208ENST00000476739 SLC34A1Q06495 639 aa8.26□□□□□ -1.09
HDAC3-208ENST00000476739 ECH1Q13011 328 aa8.26□□□□□ -1.09
HDAC3-208ENST00000476739 CARTPTQ16568 116 aa8.26□□□□□ -1.09
HDAC3-208ENST00000476739 TSTQ16762 297 aaKnown RBP8.26□□□□□ -1.09
HDAC3-208ENST00000476739 CNPY1Q3B7I2 92 aa8.26□□□□□ -1.09
HDAC3-208ENST00000476739 CLEC2AQ6UVW9 174 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms