RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 SEC61A1P61619 476 aaKnown RBP11.88□□□□□ -0.51
UPF3A-204ENST00000475218 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.88□□□□□ -0.51
UPF3A-204ENST00000475218 CLEC12AQ5QGZ9 265 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 PGM2L1Q6PCE3 622 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 DNM1P34Q6PK57 102 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 JAZF1Q86VZ6 243 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 CYB561A3Q8NBI2 242 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 OR52E2Q8NGJ4 325 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 OR2V2Q96R30 315 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 GAL3ST1Q99999 423 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 C1QTNF5Q9BXJ0 243 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 WDR76Q9H967 626 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 IL20Q9NYY1 176 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 TMCC3Q9ULS5 477 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 POLR1DQ9Y2S0 133 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 CDH10Q9Y6N8 788 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 ANKRD65E5RJM6 399 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 IDH3BO43837 385 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 RENP00797 406 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 FSHBP01225 129 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 PYCR1P32322 319 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 LCN2P80188 198 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 ZMYND11Q15326 602 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 LCN8Q6JVE9 175 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 OR10AD1Q8NGE0 317 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 TRIM15Q9C019 465 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 GCM1Q9NP62 436 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 NDE1Q9NXR1 346 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 IL19Q9UHD0 177 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 METRNQ9UJH8 293 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 ISPDA4D126 451 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 TNFRSF11BO00300 401 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 KRT36O76013 467 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 ANPEPP15144 967 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 ADRA2CP18825 462 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 IFNGR2P38484 337 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 RGS6P49758 472 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 MMP16P51512 607 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 MXRA7P84157 204 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 OR8G5Q8NG78 346 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 OR4Q3Q8NH05 313 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 APOBEC3DQ96AK3 386 aaPredicted RBP11.87□□□□□ -0.51
UPF3A-204ENST00000475218 NSL1Q96IY1 281 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 COG8Q96MW5 612 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 SLC30A2Q9BRI3 323 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 MMP26Q9NRE1 261 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 UBAP1Q9NZ09 502 aa11.87□□□□□ -0.51
UPF3A-204ENST00000475218 IQCF6A8MYZ5 107 aa11.86□□□□□ -0.51
UPF3A-204ENST00000475218 F5H0A9 414 aaPredicted RBP11.86□□□□□ -0.51
UPF3A-204ENST00000475218 SBK2P0C263 348 aa11.86□□□□□ -0.51
UPF3A-204ENST00000475218 SELEP16581 610 aa11.86□□□□□ -0.51
UPF3A-204ENST00000475218 PMELP40967 661 aa11.86□□□□□ -0.51
UPF3A-204ENST00000475218 SLC3A1Q07837 685 aa11.86□□□□□ -0.51
UPF3A-204ENST00000475218 RASSF6Q6ZTQ3 369 aa11.86□□□□□ -0.51
UPF3A-204ENST00000475218 C1QL2Q7Z5L3 287 aa11.86□□□□□ -0.51
UPF3A-204ENST00000475218 LRRC28Q86X40 367 aaPredicted RBP11.86□□□□□ -0.51
UPF3A-204ENST00000475218 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.86□□□□□ -0.51
UPF3A-204ENST00000475218 SLC37A3Q8NCC5 494 aa11.86□□□□□ -0.51
UPF3A-204ENST00000475218 MEGF10Q96KG7 1140 aa11.86□□□□□ -0.51
UPF3A-204ENST00000475218 PPP1R3CQ9UQK1 317 aa11.86□□□□□ -0.51
UPF3A-204ENST00000475218 IGHV3-64DA0A0J9YX35 117 aa11.85□□□□□ -0.51
UPF3A-204ENST00000475218 F5H5K5 113 aa11.85□□□□□ -0.51
UPF3A-204ENST00000475218 TRAPPC2LH3BP13 241 aa11.85□□□□□ -0.51
UPF3A-204ENST00000475218 TMEM178BH3BS89 294 aa11.85□□□□□ -0.51
UPF3A-204ENST00000475218 RGS9O75916 674 aaPredicted RBP11.85□□□□□ -0.51
UPF3A-204ENST00000475218 NOS3P29474 1203 aa11.85□□□□□ -0.51
UPF3A-204ENST00000475218 BTG1P62324 171 aa11.85□□□□□ -0.51
UPF3A-204ENST00000475218 TRAP1Q12931 704 aaKnown RBP11.85□□□□□ -0.51
UPF3A-204ENST00000475218 GK2Q14410 553 aaPredicted RBP11.85□□□□□ -0.51
UPF3A-204ENST00000475218 LIPNQ5VXI9 398 aa11.85□□□□□ -0.51
UPF3A-204ENST00000475218 LNX2Q8N448 690 aa11.85□□□□□ -0.51
UPF3A-204ENST00000475218 AQP11Q8NBQ7 271 aa11.85□□□□□ -0.51
UPF3A-204ENST00000475218 BHLHE23Q8NDY6 225 aa11.85□□□□□ -0.51
UPF3A-204ENST00000475218 DEFB108BQ8NET1 73 aa11.85□□□□□ -0.51
UPF3A-204ENST00000475218 OR51L1Q8NGJ5 315 aa11.85□□□□□ -0.51
UPF3A-204ENST00000475218 ZNF420Q8TAQ5 688 aaPredicted RBP11.85□□□□□ -0.51
UPF3A-204ENST00000475218 CLPTM1LQ96KA5 538 aa11.85□□□□□ -0.51
UPF3A-204ENST00000475218 PITX2Q99697 317 aa11.85□□□□□ -0.51
UPF3A-204ENST00000475218 ATF6BQ99941 703 aa11.85□□□□□ -0.51
UPF3A-204ENST00000475218 RBM4Q9BWF3 364 aaKnown RBP11.85□□□□□ -0.51
UPF3A-204ENST00000475218 NMNAT2Q9BZQ4 307 aa11.85□□□□□ -0.51
UPF3A-204ENST00000475218 MAGIXQ9H6Y5 334 aa11.85□□□□□ -0.51
UPF3A-204ENST00000475218 PATZ1Q9HBE1 687 aaKnown RBP11.85□□□□□ -0.51
UPF3A-204ENST00000475218 A0A0G2JMP0 313 aa11.84□□□□□ -0.51
UPF3A-204ENST00000475218 A0A0X1KG70 313 aa11.84□□□□□ -0.51
UPF3A-204ENST00000475218 TVP23AA6NH52 213 aa11.84□□□□□ -0.51
UPF3A-204ENST00000475218 F5H5P2 479 aa11.84□□□□□ -0.51
UPF3A-204ENST00000475218 DNAJC8O75937 253 aaPredicted RBP11.84□□□□□ -0.51
UPF3A-204ENST00000475218 TNFRSF1AP19438 455 aa11.84□□□□□ -0.51
UPF3A-204ENST00000475218 EPHA1P21709 976 aa11.84□□□□□ -0.51
UPF3A-204ENST00000475218 TNFSF4P23510 183 aa11.84□□□□□ -0.51
UPF3A-204ENST00000475218 OTX1P32242 354 aaPredicted RBP11.84□□□□□ -0.51
UPF3A-204ENST00000475218 SLC6A9P48067 706 aa11.84□□□□□ -0.51
UPF3A-204ENST00000475218 TRIM25Q14258 630 aaKnown RBP11.84□□□□□ -0.51
UPF3A-204ENST00000475218 TUSC1Q2TAM9 212 aa11.84□□□□□ -0.51
UPF3A-204ENST00000475218 SNAI3Q3KNW1 292 aa11.84□□□□□ -0.51
UPF3A-204ENST00000475218 TMEM155Q4W5P6 130 aa11.84□□□□□ -0.51
UPF3A-204ENST00000475218 DCAF12L2Q5VW00 463 aa11.84□□□□□ -0.51
UPF3A-204ENST00000475218 OR4M2Q8NGB6 313 aa11.84□□□□□ -0.51
UPF3A-204ENST00000475218 OR5L1Q8NGL2 311 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms