RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 MRI1Q9BV20 369 aa11.14□□□□□ -0.63
CPSF4-210ENST00000469897 CDADC1Q9BWV3 514 aa11.14□□□□□ -0.63
CPSF4-210ENST00000469897 KRCC1Q9NPI7 259 aaPredicted RBP11.14□□□□□ -0.63
CPSF4-210ENST00000469897 TMEM100Q9NV29 134 aa11.14□□□□□ -0.63
CPSF4-210ENST00000469897 SAMD4AQ9UPU9 718 aaKnown RBP11.14□□□□□ -0.63
CPSF4-210ENST00000469897 SOX21Q9Y651 276 aaPredicted RBP11.14□□□□□ -0.63
CPSF4-210ENST00000469897 V9GYQ6 96 aa11.14□□□□□ -0.63
CPSF4-210ENST00000469897 IGLV1-36A0A0B4J1U3 117 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 J3QW42 95 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 MLNRO43193 412 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 GADD45GO95257 159 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 HIST1H1CP16403 213 aaKnown RBP11.13□□□□□ -0.63
CPSF4-210ENST00000469897 SELEP16581 610 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 PRTN3P24158 256 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 MSX2P35548 267 aaPredicted RBP11.13□□□□□ -0.63
CPSF4-210ENST00000469897 SRP9P49458 86 aaKnown RBP11.13□□□□□ -0.63
CPSF4-210ENST00000469897 BAMBIQ13145 260 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 FAM201AQ5SY85 155 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 DOK3Q7L591 496 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 MOGAT3Q86VF5 341 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 JAZF1Q86VZ6 243 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 MUC20Q8N307 709 aaPredicted RBP11.13□□□□□ -0.63
CPSF4-210ENST00000469897 OR52E2Q8NGJ4 325 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 SLCO4A1Q96BD0 722 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 ZMYND19Q96E35 227 aaPredicted RBP11.13□□□□□ -0.63
CPSF4-210ENST00000469897 DHRS1Q96LJ7 313 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 ZNF48Q96MX3 618 aaPredicted RBP11.13□□□□□ -0.63
CPSF4-210ENST00000469897 PITX2Q99697 317 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 SLC30A2Q9BRI3 323 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 IFT27Q9BW83 186 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 MS4A7Q9GZW8 240 aaPredicted RBP11.13□□□□□ -0.63
CPSF4-210ENST00000469897 HDHD2Q9H0R4 259 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 MYLK2Q9H1R3 596 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 GORASP2Q9H8Y8 452 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 SPAG4Q9NPE6 437 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 OR5V1Q9UGF6 321 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 ATPIF1Q9UII2 106 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 PCDHGB1Q9Y5G3 927 aa11.13□□□□□ -0.63
CPSF4-210ENST00000469897 A8MXK9 166 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 IQCF6A8MYZ5 107 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 F5H5K5 113 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 IFNL4K9M1U5 179 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 ARPC3O15145 178 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 RENP00797 406 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 HKR1P10072 659 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 RPS2P15880 293 aaKnown RBP11.12□□□□□ -0.63
CPSF4-210ENST00000469897 FPR3P25089 353 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 SLC6A6P31641 620 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 SMIM11AP58511 58 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 COX10Q12887 443 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 FOXL1Q12952 345 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 MAB21L1Q13394 359 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 TUSC1Q2TAM9 212 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 SLC18B1Q6NT16 456 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 CFAP77Q6ZQR2 320 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 COLCA1Q6ZS62 124 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 KLBQ86Z14 1044 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 TAF15Q92804 592 aaKnown RBP eCLIP11.12□□□□□ -0.63
CPSF4-210ENST00000469897 C1orf147Q96MC9 270 aaPredicted RBP11.12□□□□□ -0.63
CPSF4-210ENST00000469897 TMEM246Q9BRR3 403 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 SSBP3Q9BWW4 388 aaPredicted RBP11.12□□□□□ -0.63
CPSF4-210ENST00000469897 HCAR1Q9BXC0 346 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 OR52D1Q9H346 318 aa11.12□□□□□ -0.63
CPSF4-210ENST00000469897 RPRD1BQ9NQG5 326 aaKnown RBP11.12□□□□□ -0.63
CPSF4-210ENST00000469897 TENM1Q9UKZ4 2725 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 OR6C68A6NDL8 312 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 DNAJC9-AS1A6NH13 148 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 LRRC30A6NM36 301 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 OR10H3O60404 316 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 HLA-DQA2P01906 255 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 LCATP04180 440 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 SEMG1P04279 462 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 ACSM4P0C7M7 580 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 IGHV4-38-2P0DP08 117 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 NOS3P29474 1203 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 GNB2P62879 340 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 SPIBQ01892 262 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 PAX2Q02962 417 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 GK2Q14410 553 aaPredicted RBP11.11□□□□□ -0.63
CPSF4-210ENST00000469897 KRTAP27-1Q3LI81 207 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 SLC36A3Q495N2 470 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 SLC35F1Q5T1Q4 408 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 PGM2L1Q6PCE3 622 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 LYPD2Q6UXB3 125 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 BTNL3Q6UXE8 466 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 LRRN1Q6UXK5 716 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 C19orf18Q8NEA5 215 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 SLC26A10Q8NG04 563 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 OR2AJ1Q8NGZ0 328 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 FANK1Q8TC84 345 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 RAB40AQ8WXH6 277 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 ZNF747Q9BV97 191 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 NSRP1Q9H0G5 558 aaKnown RBP11.11□□□□□ -0.63
CPSF4-210ENST00000469897 FN3KQ9H479 309 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 MIOXQ9UGB7 285 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 LRCH1Q9Y2L9 728 aa11.11□□□□□ -0.63
CPSF4-210ENST00000469897 KIR2DS1A0A191URI9 304 aa11.1□□□□□ -0.63
CPSF4-210ENST00000469897 CPT2P23786 658 aa11.1□□□□□ -0.63
CPSF4-210ENST00000469897 PRDX6P30041 224 aa11.1□□□□□ -0.63
CPSF4-210ENST00000469897 GGT2P36268 569 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms