RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 HSD17B11Q8NBQ5 300 aa13.33□□□□□ -0.28
PTPRU-205ENST00000460170 OR52H1Q8NGJ2 320 aa13.33□□□□□ -0.28
PTPRU-205ENST00000460170 THOC3Q96J01 351 aaKnown RBP13.33□□□□□ -0.28
PTPRU-205ENST00000460170 CFHR5Q9BXR6 569 aa13.33□□□□□ -0.28
PTPRU-205ENST00000460170 GNB3P16520 340 aa13.33□□□□□ -0.28
PTPRU-205ENST00000460170 TNFSF4P23510 183 aa13.33□□□□□ -0.28
PTPRU-205ENST00000460170 IRF3Q14653 427 aa13.33□□□□□ -0.28
PTPRU-205ENST00000460170 FAM109BQ6ICB4 259 aaPredicted RBP13.33□□□□□ -0.28
PTPRU-205ENST00000460170 C6orf15Q6UXA7 325 aaPredicted RBP13.33□□□□□ -0.28
PTPRU-205ENST00000460170 PIGMQ9H3S5 423 aa13.33□□□□□ -0.28
PTPRU-205ENST00000460170 FOXJ3Q9UPW0 622 aa13.33□□□□□ -0.28
PTPRU-205ENST00000460170 LRP12Q9Y561 859 aa13.33□□□□□ -0.28
PTPRU-205ENST00000460170 CSAG2Q9Y5P2 127 aa13.33□□□□□ -0.28
PTPRU-205ENST00000460170 K7EQS6 105 aa13.33□□□□□ -0.28
PTPRU-205ENST00000460170 PSMB6P28072 239 aa13.33□□□□□ -0.28
PTPRU-205ENST00000460170 SERPINF1P36955 418 aa13.33□□□□□ -0.28
PTPRU-205ENST00000460170 CD79BP40259 229 aa13.33□□□□□ -0.28
PTPRU-205ENST00000460170 PPP1CAP62136 330 aa13.33□□□□□ -0.28
PTPRU-205ENST00000460170 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.33□□□□□ -0.28
PTPRU-205ENST00000460170 PLXDC2Q6UX71 529 aa13.33□□□□□ -0.28
PTPRU-205ENST00000460170 RGS11O94810 467 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 C1QCP02747 245 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 ZNF266Q14584 549 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 CLINT1Q14677 625 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 SLC25A30Q5SVS4 291 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 SLC22A25Q6T423 547 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 LRRC3BQ96PB8 259 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 VN1R1Q9GZP7 353 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 MYOTQ9UBF9 498 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 SDCBPO00560 298 aaPredicted RBP13.32□□□□□ -0.28
PTPRU-205ENST00000460170 GREM1O60565 184 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 HRH1P35367 487 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 TMEM178AQ8NBL3 297 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 SLC38A9Q8NBW4 561 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 C11orf40Q8WZ69 217 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 RBMXL1Q96E39 390 aaKnown RBP13.32□□□□□ -0.28
PTPRU-205ENST00000460170 KIRREL1Q96J84 757 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 SSX4O60224 188 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 NXPH2O95156 264 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 SHBQ15464 509 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 WDR38Q5JTN6 314 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 CCDC71Q8IV32 467 aaPredicted RBP13.32□□□□□ -0.28
PTPRU-205ENST00000460170 PLPP5Q8NEB5 264 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 C4orf45Q96LM5 186 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 PCM1Q15154 2024 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 OTOL1A6NHN0 477 aaPredicted RBP13.32□□□□□ -0.28
PTPRU-205ENST00000460170 PRKACAP17612 351 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 CDKN2AP42771 156 aaKnown RBP13.32□□□□□ -0.28
PTPRU-205ENST00000460170 NKX6-1P78426 367 aaPredicted RBP13.32□□□□□ -0.28
PTPRU-205ENST00000460170 CADM4Q8NFZ8 388 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 SPACA9Q96E40 222 aaPredicted RBP13.32□□□□□ -0.28
PTPRU-205ENST00000460170 CCDC74BQ96LY2 380 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 ZNF2Q9BSG1 426 aaPredicted RBP13.32□□□□□ -0.28
PTPRU-205ENST00000460170 DOCK3Q8IZD9 2030 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 KIR2DS1A0A191URI9 304 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 DHHO43323 396 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 CELA2BP08218 269 aaPredicted RBP13.32□□□□□ -0.28
PTPRU-205ENST00000460170 MSL3P1P0C860 447 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 KIR2DS4P43632 304 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 GUCA2AQ02747 115 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 CD300CQ08708 224 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 SNTB1Q13884 538 aaKnown RBP13.32□□□□□ -0.28
PTPRU-205ENST00000460170 KIR2DS1Q14954 304 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 HMGN3Q15651 99 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 NLRC3Q7RTR2 1065 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 DPPA2Q7Z7J5 298 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 EXD3Q8N9H8 876 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 BHLHE23Q8NDY6 225 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 HAS2Q92819 552 aa13.32□□□□□ -0.28
PTPRU-205ENST00000460170 ANKRD9Q96BM1 317 aaPredicted RBP13.32□□□□□ -0.28
PTPRU-205ENST00000460170 MIA3Q5JRA6 1907 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 ATG2BQ96BY7 2078 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 A0A087WZY1 265 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 A0A1W2PPV4 95 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 FAM166BA8MTA8 275 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 GLSO94925 669 aaPredicted RBP13.31□□□□□ -0.28
PTPRU-205ENST00000460170 IL5P05113 134 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 GABRA2P47869 451 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 CDONQ4KMG0 1287 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 SFRP5Q5T4F7 317 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 OR51F2Q8NH61 342 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 SDSLQ96GA7 329 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 ZNFX1Q9P2E3 1918 aaKnown RBP13.31□□□□□ -0.28
PTPRU-205ENST00000460170 PYCARD-AS1I3L0S3 204 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 HBE1P02100 147 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 GSTP1P09211 210 aaKnown RBP13.31□□□□□ -0.28
PTPRU-205ENST00000460170 ZNF121P58317 390 aaPredicted RBP13.31□□□□□ -0.28
PTPRU-205ENST00000460170 OR52B4Q8NGK2 314 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 MUCL1Q96DR8 90 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 MARVELD1Q9BSK0 173 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 HAO2Q9NYQ3 351 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 PUS1Q9Y606 427 aaKnown RBP eCLIP13.31□□□□□ -0.28
PTPRU-205ENST00000460170 ALG1L2C9J202 215 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 CXCL13O43927 109 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 TPOP07202 933 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 SNRPNP63162 240 aaKnown RBP13.31□□□□□ -0.28
PTPRU-205ENST00000460170 CBLN3Q6UW01 205 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 LANCL3Q6ZV70 420 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 OR1L3Q8NH93 324 aa13.31□□□□□ -0.28
PTPRU-205ENST00000460170 MARCH1Q8TCQ1 289 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms