RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 PLPP2O43688 288 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 PNPP00491 289 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 ACSM4P0C7M7 580 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 RAP2AP10114 183 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 SRP14P37108 136 aaKnown RBP10.17□□□□□ -0.78
USP40-210ENST00000454354 TRAP1Q12931 704 aaKnown RBP10.17□□□□□ -0.78
USP40-210ENST00000454354 PPP1R8Q12972 351 aaKnown RBP10.17□□□□□ -0.78
USP40-210ENST00000454354 HLXQ14774 488 aaPredicted RBP10.17□□□□□ -0.78
USP40-210ENST00000454354 MICAQ29983 383 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 CD300LDQ6UXZ3 194 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 PEG10Q86TG7 708 aaKnown RBP10.17□□□□□ -0.78
USP40-210ENST00000454354 AQP11Q8NBQ7 271 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 SLC37A3Q8NCC5 494 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 OR8G5Q8NG78 346 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 OR2AJ1Q8NGZ0 328 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 OR2T4Q8NH00 348 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 ITLN1Q8WWA0 313 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 SIGLEC11Q96RL6 698 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 GAL3ST1Q99999 423 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 RBM4Q9BWF3 364 aaKnown RBP10.17□□□□□ -0.78
USP40-210ENST00000454354 NMNAT2Q9BZQ4 307 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 REEP1Q9H902 201 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 TMEM106BQ9NUM4 274 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 TBC1D23Q9NUY8 699 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 FAM53CQ9NYF3 392 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 BAIAP2Q9UQB8 552 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 SAMHD1Q9Y3Z3 626 aaKnown RBP10.17□□□□□ -0.78
USP40-210ENST00000454354 NPTNQ9Y639 398 aa10.17□□□□□ -0.78
USP40-210ENST00000454354 ARRDC5A6NEK1 342 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 AQP12BA6NM10 295 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 IQCF6A8MYZ5 107 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 IFNL4K9M1U5 179 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 HLA-DQA2P01906 255 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 OTX1P32242 354 aaPredicted RBP10.16□□□□□ -0.78
USP40-210ENST00000454354 PYCR1P32322 319 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 PCK2Q16822 640 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 TMEM155Q4W5P6 130 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 OR2T2Q6IF00 324 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 SLC27A4Q6P1M0 643 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 AQP12AQ8IXF9 295 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 ADGRG5Q8IZF4 528 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 CYB561A3Q8NBI2 242 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 PROKR2Q8NFJ6 384 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 OR2T33Q8NG76 320 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 OR10S1Q8NGN2 331 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 OR4Q3Q8NH05 313 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 ZNRF4Q8WWF5 429 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 CCDC124Q96CT7 223 aaKnown RBP10.16□□□□□ -0.78
USP40-210ENST00000454354 MAP6Q96JE9 813 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 CLPTM1LQ96KA5 538 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 OR2V2Q96R30 315 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 PITX2Q99697 317 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 SLC30A2Q9BRI3 323 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 CDADC1Q9BWV3 514 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 TSSK6Q9BXA6 273 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 DDX28Q9NUL7 540 aaKnown RBP10.16□□□□□ -0.78
USP40-210ENST00000454354 DCAF16Q9NXF7 216 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 PPP1R3CQ9UQK1 317 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 COMMD3-BMI1R4GMX3 469 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 U3KQV3 271 aa10.16□□□□□ -0.78
USP40-210ENST00000454354 A0A0G2JMP0 313 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 A0A0X1KG70 313 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 ISPDA4D126 451 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 J3QLI3 93 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 MLNRO43193 412 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 TCF21O43680 179 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 PSKH1P11801 424 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 ZNF823P16415 610 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 SELEP16581 610 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 HOXB6P17509 224 aaKnown RBP10.15□□□□□ -0.78
USP40-210ENST00000454354 MMP16P51512 607 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 SLC25A1P53007 311 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 BTG1P62324 171 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 HNRNPA0Q13151 305 aaKnown RBP10.15□□□□□ -0.78
USP40-210ENST00000454354 CRMP1Q14194 572 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 GK2Q14410 553 aaPredicted RBP10.15□□□□□ -0.78
USP40-210ENST00000454354 LYPD4Q6UWN0 246 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 C1orf229Q6ZS94 237 aaPredicted RBP10.15□□□□□ -0.78
USP40-210ENST00000454354 OR5AS1Q8N127 324 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 SPICQ8N5J4 248 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 TEX29Q8N6K0 151 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 OR4M2Q8NGB6 313 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 OR10G2Q8NGC3 310 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 OR13G1Q8NGZ3 307 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 MEGF10Q96KG7 1140 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 LRGUKQ96M69 825 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 ZNF582Q96NG8 517 aaPredicted RBP10.15□□□□□ -0.78
USP40-210ENST00000454354 TMPRSS13Q9BYE2 586 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 GCM1Q9NP62 436 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 CMC2Q9NRP2 79 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 ARMC1Q9NVT9 282 aa10.15□□□□□ -0.78
USP40-210ENST00000454354 PPIAL4EA0A075B759 164 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 PPIAL4CA0A0B4J2A2 164 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 TVP23AA6NH52 213 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 F5H0A9 414 aaPredicted RBP10.14□□□□□ -0.79
USP40-210ENST00000454354 PPIAL4DF5H284 164 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 F5H5K5 113 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 TMEM178BH3BS89 294 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 M0R135 149 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 SOX14O95416 240 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms