RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TRAM1L1Q8N609 369 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 ZNF614Q8N883 585 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 ZNF557Q8N988 423 aaPredicted RBP3.34□□□□□ -1.87
VPS29-202ENST00000447578 SUMF1Q8NBK3 374 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 AQP11Q8NBQ7 271 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 OR1F12Q8NHA8 337 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 HCAR2Q8TDS4 363 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 ADAMTS16Q8TE57 1224 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 SSC4DQ8WTU2 575 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 ASZ1Q8WWH4 475 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 ING5Q8WYH8 240 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 TMEM159Q96B96 161 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 TESCQ96BS2 214 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 C12orf43Q96C57 262 aaKnown RBP3.34□□□□□ -1.87
VPS29-202ENST00000447578 ISOC1Q96CN7 298 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 RASD2Q96D21 266 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 C11orf24Q96F05 449 aaPredicted RBP3.34□□□□□ -1.87
VPS29-202ENST00000447578 PYURFQ96I23 114 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 PANX1Q96RD7 426 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 MBOAT4Q96T53 435 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 RBM4BQ9BQ04 359 aaKnown RBP3.34□□□□□ -1.87
VPS29-202ENST00000447578 DCUN1D5Q9BTE7 237 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 RIOK2Q9BVS4 552 aaKnown RBP3.34□□□□□ -1.87
VPS29-202ENST00000447578 OSBPL10Q9BXB5 764 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 YTHDF1Q9BYJ9 559 aaKnown RBP3.34□□□□□ -1.87
VPS29-202ENST00000447578 C11orf49Q9H6J7 331 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 CXorf21Q9HAI6 301 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 POLE4Q9NR33 117 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 SLC17A5Q9NRA2 495 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 USE1Q9NZ43 259 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 STOX2Q9P2F5 926 aaPredicted RBP3.34□□□□□ -1.87
VPS29-202ENST00000447578 PIGLQ9Y2B2 252 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 NUP205Q92621 2012 aa3.34□□□□□ -1.88
VPS29-202ENST00000447578 ANKRD36A6QL64 1941 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 IGLV7-46A0A075B6I9 117 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 LOC100130705A0A1B0GUX0 176 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 SLC5A10A0PJK1 596 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 TSPAN11A1L157 253 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 TRABD2BA6NFA1 517 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 OR52A4PA6NMU1 304 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 HIDE1A8MVS5 230 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 TMX2-CTNND1H3BSU7 103 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 hCG_2039718K7EN88 272 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 ZNF701M0R085 212 aaPredicted RBP3.33□□□□□ -1.88
VPS29-202ENST00000447578 KPNA3O00505 521 aaPredicted RBP3.33□□□□□ -1.88
VPS29-202ENST00000447578 BCKDKO14874 412 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 EFNA2O43921 213 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 TIMM8AO60220 97 aaPredicted RBP3.33□□□□□ -1.88
VPS29-202ENST00000447578 RAMP1O60894 148 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 PSIP1O75475 530 aaKnown RBP3.33□□□□□ -1.88
VPS29-202ENST00000447578 WBP4O75554 376 aaKnown RBP3.33□□□□□ -1.88
VPS29-202ENST00000447578 ZFAND5O76080 213 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 C1orf105O95561 183 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 ETHE1O95571 254 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 C1QCP02747 245 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 FABP3P05413 133 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 CTSLP07711 333 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 RETP07949 1114 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 SNRPCP09234 159 aaKnown RBP3.33□□□□□ -1.88
VPS29-202ENST00000447578 H2BFMP0C1H6 154 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 LAMP1P11279 417 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 PRPS1L1P21108 318 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 CRHBPP24387 322 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 DCKP27707 260 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 RPL4P36578 427 aaKnown RBP3.33□□□□□ -1.88
VPS29-202ENST00000447578 ARHGDIAP52565 204 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 PRRX1P54821 245 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 NUP107P57740 925 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 SEC61GP60059 68 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 IL5RAQ01344 420 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 ZNF33BQ06732 778 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 DOC2AQ14183 400 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 ZNF77Q15935 545 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 TCEAL5Q5H9L2 206 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 HENMT1Q5T8I9 393 aaKnown RBP3.33□□□□□ -1.88
VPS29-202ENST00000447578 ZNF691Q5VV52 312 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 OR2T5Q6IEZ7 315 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 ADNP2Q6IQ32 1131 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 MED27Q6P2C8 311 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 ERICH5Q6P6B1 374 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 TMEM220Q6QAJ8 160 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 METAP1DQ6UB28 335 aaPredicted RBP3.33□□□□□ -1.88
VPS29-202ENST00000447578 ANGPTL8Q6UXH0 198 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 STAC2Q6ZMT1 411 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 TMEM179BQ7Z7N9 219 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 GALNT10Q86SR1 603 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 MOB3BQ86TA1 216 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 HORMAD1Q86X24 394 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 HIPK1Q86Z02 1210 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 BPIFB2Q8N4F0 458 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 BPIFB6Q8NFQ5 453 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 BEST4Q8NFU0 473 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 OR10A7Q8NGE5 316 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 OR52E4Q8NGH9 312 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 OR4A15Q8NGL6 344 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 OR2T29Q8NH02 315 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 RFESDQ8TAC1 157 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 ZNF420Q8TAQ5 688 aaPredicted RBP3.33□□□□□ -1.88
VPS29-202ENST00000447578 STARD8Q92502 1023 aa3.33□□□□□ -1.88
VPS29-202ENST00000447578 POP5Q969H6 163 aaKnown RBP3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms