RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 SLIRPQ9GZT3 109 aaKnown RBP13.19□□□□□ -0.3
PTPRU-204ENST00000428026 C12orf10Q9HB07 376 aa13.19□□□□□ -0.3
PTPRU-204ENST00000428026 M0R082 166 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 XRCC2O43543 280 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 TMPRSS11DO60235 418 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 STAC2Q6ZMT1 411 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 PLEKHF2Q9H8W4 249 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 TGOLN2O43493 480 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 NID1P14543 1247 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 DOC2BQ14184 412 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 C5orf46Q6UWT4 87 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 MAGT1Q9H0U3 335 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 ZNF355PQ9NSJ1 428 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 LY75O60449 1722 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 SCRG1O75711 98 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 POLR2AP24928 1970 aaKnown RBP13.18□□□□□ -0.3
PTPRU-204ENST00000428026 FCER1GP30273 86 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 ADPRHP54922 357 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 NKG7Q16617 165 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 SLC35G3Q8N808 338 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 AGBL5Q8NDL9 886 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 GPR160Q9UJ42 338 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 FBXO4Q9UKT5 387 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 TMEM184BQ9Y519 407 aaPredicted RBP13.18□□□□□ -0.3
PTPRU-204ENST00000428026 ARL2-SNX15V9GYD0 113 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 COL24A1Q17RW2 1714 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 IGHV3-64DA0A0J9YX35 117 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 A0A1W2PPQ1 181 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 PRKNO60260 465 aaPredicted RBP13.18□□□□□ -0.3
PTPRU-204ENST00000428026 GSTP1P09211 210 aaKnown RBP13.18□□□□□ -0.3
PTPRU-204ENST00000428026 OR1J2Q8NGS2 313 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 FAM174AQ8TBP5 190 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 SMIM19Q96E16 107 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 CDX2Q99626 313 aaPredicted RBP13.18□□□□□ -0.3
PTPRU-204ENST00000428026 CFHR5Q9BXR6 569 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 GAR1Q9NY12 217 aaKnown RBP13.18□□□□□ -0.3
PTPRU-204ENST00000428026 MICAL3Q7RTP6 2002 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 IGHV3-20A0A0C4DH32 117 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 SNRPGP15A8MWD9 76 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 CT45A6P0DMU7 189 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 CT45A5P0DMU8 189 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 CT45A7P0DMV0 189 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 CT45A8P0DMV1 189 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 CT45A9P0DMV2 189 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 ARL16Q0P5N6 197 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 CT45A2Q5DJT8 189 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 CT45A1Q5HYN5 189 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 CATSPERDQ86XM0 798 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 OR2L13Q8N349 312 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 OR10J5Q8NHC4 309 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 CT45A3Q8NHU0 189 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 EMG1Q92979 244 aaKnown RBP13.18□□□□□ -0.3
PTPRU-204ENST00000428026 CMBLQ96DG6 245 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 MS4A6EQ96DS6 147 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 SLC46A1Q96NT5 459 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 ZNF346Q9UL40 294 aaKnown RBP13.18□□□□□ -0.3
PTPRU-204ENST00000428026 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.18□□□□□ -0.3
PTPRU-204ENST00000428026 LAMA4Q16363 1823 aa13.18□□□□□ -0.3
PTPRU-204ENST00000428026 SLC31A2O15432 143 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 GRPP07492 148 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 IAPPP10997 89 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 PTHLHP12272 177 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 CDK5R1Q15078 307 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 COL13A1Q5TAT6 717 aaPredicted RBP13.17□□□□□ -0.3
PTPRU-204ENST00000428026 THNSL2Q86YJ6 484 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 MBNL1Q9NR56 388 aaKnown RBP13.17□□□□□ -0.3
PTPRU-204ENST00000428026 PPP1R3CQ9UQK1 317 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 PYCARD-AS1I3L0S3 204 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 LRP3O75074 770 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 TMEM268Q5VZI3 342 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 XAF1Q6GPH4 301 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 BTNL8Q6UX41 500 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 OR51I2Q9H344 312 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 RHOFQ9HBH0 211 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 ANKRD10Q9NXR5 420 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 BCL2L11O43521 198 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 AQP8O94778 261 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 MPGP29372 298 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 DIO1P49895 249 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 H1FNTQ75WM6 255 aaPredicted RBP13.17□□□□□ -0.3
PTPRU-204ENST00000428026 SIGLECL1Q8N7X8 197 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 ANKRD53Q8N9V6 530 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 SEMA6DQ8NFY4 1073 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 CMTM2Q8TAZ6 248 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 LHX4Q969G2 390 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 OR2A14Q96R47 310 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 BCO1Q9HAY6 547 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 PRELID3BQ9Y3B1 194 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 COL11A2P13942 1736 aaPredicted RBP13.17□□□□□ -0.3
PTPRU-204ENST00000428026 RREB1Q92766 1687 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 CTRB1P17538 263 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 ADRA2CP18825 462 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 ZP3P21754 424 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 ZNF528Q3MIS6 628 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 CTRB2Q6GPI1 263 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 H2BFWTQ7Z2G1 175 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 GJC3Q8NFK1 279 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 SMIM7Q9BQ49 75 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 SLC35D1Q9NTN3 355 aa13.17□□□□□ -0.3
PTPRU-204ENST00000428026 ARAP2Q8WZ64 1704 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms