RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 GPN3Q9UHW5 284 aaPredicted RBP13.16□□□□□ -0.3
USP4-203ENST00000415188 SLC22A13Q9Y226 551 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 RPH3AQ9Y2J0 694 aaPredicted RBP13.16□□□□□ -0.3
USP4-203ENST00000415188 CLEC18AA5D8T8 446 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 ZNF354AO60765 605 aaPredicted RBP13.16□□□□□ -0.3
USP4-203ENST00000415188 PNPP00491 289 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 CPN1P15169 458 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 UQCRFS1P47985 274 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 POU3F4P49335 361 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 POU3F1Q03052 451 aaPredicted RBP13.16□□□□□ -0.3
USP4-203ENST00000415188 MFGE8Q08431 387 aaPredicted RBP13.16□□□□□ -0.3
USP4-203ENST00000415188 ETFDHQ16134 617 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 ZNF239Q16600 458 aaKnown RBP13.16□□□□□ -0.3
USP4-203ENST00000415188 PLPPR5Q32ZL2 321 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 SFRP4Q6FHJ7 346 aaPredicted RBP13.16□□□□□ -0.3
USP4-203ENST00000415188 SEZ6L2Q6UXD5 910 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 CLEC18BQ6UXF7 455 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 PIAS4Q8N2W9 510 aaPredicted RBP13.16□□□□□ -0.3
USP4-203ENST00000415188 CLEC18CQ8NCF0 446 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 OR10H5Q8NGA6 315 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 ST7LQ8TDW4 575 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 PTX4Q96A99 478 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 DACT3Q96B18 629 aaPredicted RBP13.16□□□□□ -0.3
USP4-203ENST00000415188 FOXRED1Q96CU9 486 aaPredicted RBP13.16□□□□□ -0.3
USP4-203ENST00000415188 DNAJA3Q96EY1 480 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 ARL5BQ96KC2 179 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 RBP7Q96R05 134 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 METTL7AQ9H8H3 244 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 SCPEP1Q9HB40 452 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 OR52A1Q9UKL2 312 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 GTF2A1LQ9UNN4 478 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 FREM3P0C091 2139 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 SMLR1H3BR10 107 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 HLA-DOBP13765 273 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 PTGDSP41222 190 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 FOLR3P41439 243 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 DNASE1L1P49184 302 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 RRADP55042 308 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 SNTA1Q13424 505 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 SSPNQ14714 243 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 PRR30Q53SZ7 412 aaPredicted RBP13.15□□□□□ -0.3
USP4-203ENST00000415188 THEM4Q5T1C6 240 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 MRPL14Q6P1L8 145 aaKnown RBP13.15□□□□□ -0.3
USP4-203ENST00000415188 C3orf33Q6P1S2 294 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 MTFR2Q6P444 385 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 TMEM81Q6P7N7 255 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 ARSKQ6UWY0 536 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 GLDNQ6ZMI3 551 aaPredicted RBP13.15□□□□□ -0.3
USP4-203ENST00000415188 C16orf47Q6ZP98 133 aaPredicted RBP13.15□□□□□ -0.3
USP4-203ENST00000415188 OR51D1Q8NGF3 324 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 OR2Y1Q8NGV0 311 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 CPT1CQ8TCG5 803 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 THAP3Q8WTV1 239 aaPredicted RBP13.15□□□□□ -0.3
USP4-203ENST00000415188 RNF133Q8WVZ7 376 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 SPACA9Q96E40 222 aaPredicted RBP13.15□□□□□ -0.3
USP4-203ENST00000415188 ZNF436Q9C0F3 470 aaPredicted RBP13.15□□□□□ -0.3
USP4-203ENST00000415188 NOX3Q9HBY0 568 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 G6PC2Q9NQR9 355 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 DLL4Q9NR61 685 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 KLK11Q9UBX7 282 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 ZNF107Q9UII5 783 aaPredicted RBP13.15□□□□□ -0.3
USP4-203ENST00000415188 MGAT4AQ9UM21 535 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 VDAC3Q9Y277 283 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 LRRK2Q5S007 2527 aa13.15□□□□□ -0.3
USP4-203ENST00000415188 A0A087WZY1 265 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 LOC102723996A0A087X1L8 192 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 A0A1W2PQ72 361 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 CIB4A0PJX0 185 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 ANKRD34BA5PLL1 514 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 TP53I11O14683 189 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 ARPC1BO15143 372 aaKnown RBP13.14□□□□□ -0.31
USP4-203ENST00000415188 ICMTO60725 284 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 UMODP07911 640 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 ITGA5P08648 1049 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 H2BFMP0C1H6 154 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 AKAIN1P0CW23 69 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 GABRA1P14867 456 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 IL11P20809 199 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 ADH6P28332 368 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 EIF1P41567 113 aaKnown RBP13.14□□□□□ -0.31
USP4-203ENST00000415188 MMP16P51512 607 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 ACTBP60709 375 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 ACTG1P63261 375 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 RBMS2Q15434 407 aaKnown RBP13.14□□□□□ -0.31
USP4-203ENST00000415188 ODF4Q2M2E3 257 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 C2orf76Q3KRA6 126 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 TMEM255AQ5JRV8 349 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 C1orf100Q5SVJ3 147 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 OR5M10Q6IEU7 315 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 DCXRQ7Z4W1 244 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 PPP1R32Q7Z5V6 425 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.14□□□□□ -0.31
USP4-203ENST00000415188 UEVLDQ8IX04 471 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 RBMXL3Q8N7X1 1067 aaKnown RBP13.14□□□□□ -0.31
USP4-203ENST00000415188 OR2M3Q8NG83 312 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 OR13C3Q8NGS6 347 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 SLC25A28Q96A46 364 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 FOXN4Q96NZ1 517 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 DEFB126Q9BYW3 111 aa13.14□□□□□ -0.31
USP4-203ENST00000415188 SLCO5A1Q9H2Y9 848 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms