RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PELI1Q96FA3 418 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 SEC22AQ96IW7 307 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 CA10Q9NS85 328 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 FGF21Q9NSA1 209 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 SLC45A2Q9UMX9 530 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 TOPAZ1Q8N9V7 1692 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 PLPP1O14494 284 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 SORBS2O94875 1100 aaKnown RBP5.55□□□□□ -1.52
SCN1A-203ENST00000409050 PMP2P02689 132 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 ATF1P18846 271 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 PPP1CBP62140 327 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 LEXMQ3ZCV2 418 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 TRILQ7L0X0 811 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 MAVSQ7Z434 540 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 ZNF296Q8WUU4 475 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-203ENST00000409050 ARSGQ96EG1 525 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 TMEM56Q96MV1 263 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 SMIM7Q9BQ49 75 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 PAAF1Q9BRP4 392 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 TEX50A0A1B0GTY4 177 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 CLDN34H7C241 214 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 HMGN4O00479 90 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 IGLV3-25P01717 112 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 MGST1P10620 155 aaKnown RBP5.55□□□□□ -1.52
SCN1A-203ENST00000409050 DEFB133Q30KQ1 61 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 B3GNTL1Q67FW5 361 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-203ENST00000409050 BTNL3Q6UXE8 466 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 IL20RBQ6UXL0 311 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 ZNF574Q6ZN55 896 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-203ENST00000409050 DGAT2L6Q6ZPD8 337 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 TMPRSS11FQ6ZWK6 438 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 NPEPL1Q8NDH3 523 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 ZNF2Q9BSG1 426 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-203ENST00000409050 SORBS1Q9BX66 1292 aaKnown RBP5.55□□□□□ -1.52
SCN1A-203ENST00000409050 COMMD5Q9GZQ3 224 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 CTDSP1Q9GZU7 261 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 LINC00597Q9H2U6 94 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 TJP1Q07157 1748 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 DUXBA0A1W2PPF3 345 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 ANKUB1A6NFN9 424 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 M0R135 149 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 RGS13O14921 159 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 NDUFB6O95139 128 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 SULT1A3P0DMM9 295 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 SULT1A4P0DMN0 295 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 DEFA4P12838 97 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 ARSAP15289 507 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 C11orf87Q6NUJ2 197 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 DPPA3Q6W0C5 159 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 C1orf174Q8IYL3 243 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 ZDHHC23Q8IYP9 409 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 CNEP1R1Q8N9A8 125 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 OR5AP2Q8NGF4 316 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 OR8U1Q8NH10 309 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 ZDHHC19Q8WVZ1 309 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-203ENST00000409050 APOBEC3DQ96AK3 386 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-203ENST00000409050 ZNF799Q96GE5 643 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 POM121L2Q96KW2 1035 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 GINS3Q9BRX5 216 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 MYH6P13533 1939 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 GSTZ1O43708 216 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-203ENST00000409050 GPX5O75715 221 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 HRASP01112 189 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 CLEC3BP05452 202 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 TBXA2RP21731 343 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 GJA5P36382 358 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 RGRP47804 291 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 GABRA4P48169 554 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 NPY4RP50391 375 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 HLXQ14774 488 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-203ENST00000409050 ISXQ2M1V0 245 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 ZNF718Q3SXZ3 478 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 VMA21Q3ZAQ7 101 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 TRMT12Q53H54 448 aaKnown RBP5.55□□□□□ -1.52
SCN1A-203ENST00000409050 STAC2Q6ZMT1 411 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 HMGN2P46Q86SG4 172 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 CALHM3Q86XJ0 350 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 CMTM4Q8IZR5 234 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 LINC01465Q8N7H1 131 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 DOK1Q99704 481 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 ULBP3Q9BZM4 244 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 TOLLIPQ9H0E2 274 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 SIRT7Q9NRC8 400 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 SIRT5Q9NXA8 310 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 SSC5DA1L4H1 1573 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 MAST2Q6P0Q8 1798 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 OR5H8P0DN80 308 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 SPCS3P61009 180 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 AANATQ16613 207 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 DRAM2Q6UX65 266 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 Q7L0L9 218 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 ANAPC16Q96DE5 110 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 HINT3Q9NQE9 182 aaKnown RBP5.54□□□□□ -1.52
SCN1A-203ENST00000409050 MANBALQ9NQG1 85 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 SLC17A4Q9Y2C5 497 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 MEIKINA0A087WXM9 373 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 CRYM-AS1A6NIL9 109 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 ZFP92A6NM28 416 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 M0QYG6 137 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 OPN1MWP04001 364 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms