RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 KRT77Q7Z794 578 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 ZNF540Q8NDQ6 660 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 OR1J2Q8NGS2 313 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 ASB17Q8WXJ9 295 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 MROQ9BYG7 248 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 ELOVL3Q9HB03 270 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 CDH20Q9HBT6 801 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 ERVK13-1Q9NX77 482 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 PCDHGB1Q9Y5G3 927 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 PDZD2O15018 2839 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 DAPL1A0PJW8 107 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 M0R135 149 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 GPRIN2O60269 458 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 ICMTO60725 284 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 CCDC159P0C7I6 412 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 SLC2A1P11166 492 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 DCKP27707 260 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 PCSK6P29122 969 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 ETV1P50549 477 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 ERVS71-1P61550 626 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 CSNK2BP67870 215 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 TAF13Q15543 124 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 MSMPQ1L6U9 139 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 DEGS2Q6QHC5 323 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 COLCA1Q6ZS62 124 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 ZNF786Q8N393 782 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 ZNF799Q96GE5 643 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 KCNS3Q9BQ31 491 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 CLEC4MQ9H2X3 399 aaPredicted RBP13.74□□□□□ -0.21
HMGA1-204ENST00000401473 CNOT2Q9NZN8 540 aaKnown RBP13.74□□□□□ -0.21
HMGA1-204ENST00000401473 CLEC2DQ9UHP7 191 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 NAV2Q8IVL1 2488 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 SMPD2O60906 423 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 ABHD16AO95870 558 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 PIPP12273 146 aaPredicted RBP13.74□□□□□ -0.21
HMGA1-204ENST00000401473 SLC35A2P78381 396 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 EGR3Q06889 387 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 GALEQ14376 348 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 PRSS45Q7RTY3 260 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.74□□□□□ -0.21
HMGA1-204ENST00000401473 RNF166Q96A37 237 aaPredicted RBP13.74□□□□□ -0.21
HMGA1-204ENST00000401473 TMEM80Q96HE8 168 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 C1QTNF5Q9BXJ0 243 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 DUSP21Q9H596 190 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 PLEKHF2Q9H8W4 249 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 ISG20L2Q9H9L3 353 aaKnown RBP13.74□□□□□ -0.21
HMGA1-204ENST00000401473 CA10Q9NS85 328 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 TBCCD1Q9NVR7 557 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 ZNF319Q9P2F9 582 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 POU2F3Q9UKI9 436 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 IKZF2Q9UKS7 526 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 DIMT1Q9UNQ2 313 aaKnown RBP13.74□□□□□ -0.21
HMGA1-204ENST00000401473 STARD10Q9Y365 291 aa13.74□□□□□ -0.21
HMGA1-204ENST00000401473 RAI1Q7Z5J4 1906 aaPredicted RBP13.73□□□□□ -0.21
HMGA1-204ENST00000401473 TEX15Q9BXT5 2789 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 EFCAB10A6NFE3 127 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 PHYHO14832 338 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 GOSR1O95249 250 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 PNPP00491 289 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 HSD11B1P28845 292 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 SSTR2P30874 369 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 TPTEP56180 551 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 OR12D2P58182 307 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 GRB2P62993 217 aaKnown RBP13.73□□□□□ -0.21
HMGA1-204ENST00000401473 ACTC1P68032 377 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 ACTA1P68133 377 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 SNAI3Q3KNW1 292 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 ZNF672Q499Z4 452 aaPredicted RBP13.73□□□□□ -0.21
HMGA1-204ENST00000401473 TP53I3Q53FA7 332 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 LIPNQ5VXI9 398 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 RFPL4BQ6ZWI9 263 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 NUP37Q8NFH4 326 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 SNX33Q8WV41 574 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 TMEM171Q8WVE6 324 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 AKAP1Q92667 903 aaKnown RBP eCLIP13.73□□□□□ -0.217e-12■■■■□ 24.8
HMGA1-204ENST00000401473 SPTSSAQ969W0 71 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 JAM3Q9BX67 310 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 CISD1Q9NZ45 108 aaKnown RBP13.73□□□□□ -0.21
HMGA1-204ENST00000401473 ATP23Q9Y6H3 246 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 ARID1AO14497 2285 aa13.73□□□□□ -0.21
HMGA1-204ENST00000401473 ZNF254O75437 659 aa13.72□□□□□ -0.21
HMGA1-204ENST00000401473 THBS4P35443 961 aa13.72□□□□□ -0.21
HMGA1-204ENST00000401473 RAD52P43351 418 aa13.72□□□□□ -0.21
HMGA1-204ENST00000401473 SLC6A9P48067 706 aa13.72□□□□□ -0.21
HMGA1-204ENST00000401473 CX3CR1P49238 355 aa13.72□□□□□ -0.21
HMGA1-204ENST00000401473 SNTB2Q13425 540 aaKnown RBP13.72□□□□□ -0.21
HMGA1-204ENST00000401473 CDONQ4KMG0 1287 aa13.72□□□□□ -0.21
HMGA1-204ENST00000401473 VHLLQ6RSH7 139 aa13.72□□□□□ -0.21
HMGA1-204ENST00000401473 TMEM200AQ86VY9 491 aa13.72□□□□□ -0.21
HMGA1-204ENST00000401473 ZNF283Q8N7M2 679 aa13.72□□□□□ -0.21
HMGA1-204ENST00000401473 PPP1R14AQ96A00 147 aa13.72□□□□□ -0.21
HMGA1-204ENST00000401473 ALG8Q9BVK2 526 aa13.72□□□□□ -0.21
HMGA1-204ENST00000401473 POFUT1Q9H488 388 aa13.72□□□□□ -0.21
HMGA1-204ENST00000401473 BRD7Q9NPI1 651 aa13.72□□□□□ -0.21
HMGA1-204ENST00000401473 SCN3BQ9NY72 215 aa13.72□□□□□ -0.21
HMGA1-204ENST00000401473 EIF3KQ9UBQ5 218 aaKnown RBP13.72□□□□□ -0.21
HMGA1-204ENST00000401473 N6AMT1Q9Y5N5 214 aa13.72□□□□□ -0.21
HMGA1-204ENST00000401473 ANKRD17O75179 2603 aaKnown RBP13.72□□□□□ -0.21
HMGA1-204ENST00000401473 METTL15A6NJ78 407 aa13.72□□□□□ -0.21
HMGA1-204ENST00000401473 SRSF10O75494 262 aaKnown RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms