RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 PRR14Q9BWN1 585 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 TCFL5Q9UL49 500 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 LINC01387J3KSC0 135 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 TNFSF11O14788 317 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 FGF17O60258 216 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 SELENOFO60613 162 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 H2AFB1P0C5Y9 115 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 HTR1FP30939 366 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 BRS3P32247 399 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 P2RX3P56373 397 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 BTG2P78543 158 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 ZNF90Q03938 601 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 HMGN3Q15651 99 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 FCRL6Q6DN72 434 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 LHFPL2Q6ZUX7 228 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 NHLRC2Q8NBF2 726 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 TTC9Q92623 222 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 LHX4Q969G2 390 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 MS4A6EQ96DS6 147 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 POM121L2Q96KW2 1035 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 FIZ1Q96SL8 496 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 PLA2G12AQ9BZM1 189 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 GPR84Q9NQS5 396 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 YTHDF2Q9Y5A9 579 aaKnown RBP6.54□□□□□ -1.36
UPF2-203ENST00000397053 FAM157AC9JC47 383 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 TRAPPC2P0DI81 140 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 TRAPPC2BP0DI82 140 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 ITGAMP11215 1152 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 MYF5P13349 255 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 GPR3P46089 330 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 EMX1Q04741 257 aaPredicted RBP6.54□□□□□ -1.36
UPF2-203ENST00000397053 SMN1Q16637 294 aaKnown RBP6.54□□□□□ -1.36
UPF2-203ENST00000397053 CCSMST1Q4G0I0 132 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 SSX7Q7RTT5 188 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.54□□□□□ -1.36
UPF2-203ENST00000397053 CCL4L1Q8NHW4 92 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 APOBEC4Q8WW27 367 aaKnown RBP6.54□□□□□ -1.36
UPF2-203ENST00000397053 SPACA9Q96E40 222 aaPredicted RBP6.54□□□□□ -1.36
UPF2-203ENST00000397053 PSD2Q9BQI7 771 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 LRFN3Q9BTN0 628 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 MKRN2Q9H000 416 aaKnown RBP6.54□□□□□ -1.36
UPF2-203ENST00000397053 OR51I2Q9H344 312 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 WNT16Q9UBV4 365 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 HDGFL3Q9Y3E1 203 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 FER1L4A9Z1Z3 1794 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 K7ESM1 405 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 PLPP1O14494 284 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 TAGLN2P37802 199 aaKnown RBP6.54□□□□□ -1.36
UPF2-203ENST00000397053 AKR1C3P42330 323 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 CASP3P42574 277 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 PNLIPRP2P54317 469 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 PPP2CBP62714 309 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 RAB1AP62820 205 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 PPP2CAP67775 309 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 PLK5Q496M5 336 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 WIPI1Q5MNZ9 446 aaPredicted RBP6.54□□□□□ -1.36
UPF2-203ENST00000397053 SLC25A30Q5SVS4 291 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 AFMIDQ63HM1 303 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 BTNL8Q6UX41 500 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 ZNF705AQ6ZN79 300 aaPredicted RBP6.54□□□□□ -1.36
UPF2-203ENST00000397053 PLPPR2Q96GM1 343 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 TMEM56Q96MV1 263 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 LAT2Q9GZY6 243 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 GAR1Q9NY12 217 aaKnown RBP6.54□□□□□ -1.36
UPF2-203ENST00000397053 SNX11Q9Y5W9 270 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 MYO18AQ92614 2054 aaKnown RBP6.54□□□□□ -1.36
UPF2-203ENST00000397053 A0A1W2PRD5 423 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 A0A1W2PRF3 423 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 A0A1W2PRM7 423 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 ZNF320A2RRD8 509 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 PPP5D1E7EU14 171 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 CRXO43186 299 aaPredicted RBP6.54□□□□□ -1.36
UPF2-203ENST00000397053 SFTPCP11686 197 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 DUSP1P28562 367 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 TRIM23P36406 574 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 TRA2AQ13595 282 aaKnown RBP eCLIP6.54□□□□□ -1.365e-29■■■■■ 35.2
UPF2-203ENST00000397053 ZNF260Q3ZCT1 412 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 ASTLQ6HA08 431 aaPredicted RBP6.54□□□□□ -1.36
UPF2-203ENST00000397053 WDR88Q6ZMY6 472 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 Q6ZS52 159 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 OR10R2Q8NGX6 335 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 TMEM171Q8WVE6 324 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.54□□□□□ -1.36
UPF2-203ENST00000397053 YIPF5Q969M3 257 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 APOBEC3DQ96AK3 386 aaPredicted RBP6.54□□□□□ -1.36
UPF2-203ENST00000397053 GALMQ96C23 342 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 SDF2Q99470 211 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 ZNF2Q9BSG1 426 aaPredicted RBP6.54□□□□□ -1.36
UPF2-203ENST00000397053 RSRP1Q9BUV0 290 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 C1QTNF3Q9BXJ4 246 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 SLC35D1Q9NTN3 355 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 ZNF724A8MTY0 619 aa6.53□□□□□ -1.36
UPF2-203ENST00000397053 PPP3CBP16298 524 aa6.53□□□□□ -1.36
UPF2-203ENST00000397053 M6PRP20645 277 aa6.53□□□□□ -1.36
UPF2-203ENST00000397053 MTNR1BP49286 362 aa6.53□□□□□ -1.36
UPF2-203ENST00000397053 PTTG1IPP53801 180 aa6.53□□□□□ -1.36
UPF2-203ENST00000397053 RPS25P62851 125 aaKnown RBP6.53□□□□□ -1.36
UPF2-203ENST00000397053 GSG1Q2KHT4 349 aa6.53□□□□□ -1.36
UPF2-203ENST00000397053 ACOT6Q3I5F7 207 aaPredicted RBP6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms