RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TMEM163Q8TC26 289 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 POFUT1Q9H488 388 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 TEP1Q99973 2627 aaKnown RBP18.57■□□□□ 0.56
CLN3-207ENST00000395653 C17orf100A8MU93 164 aa18.56■□□□□ 0.56
CLN3-207ENST00000395653 M0R135 149 aa18.56■□□□□ 0.56
CLN3-207ENST00000395653 SELENOFO60613 162 aa18.56■□□□□ 0.56
CLN3-207ENST00000395653 PSG7Q13046 419 aa18.56■□□□□ 0.56
CLN3-207ENST00000395653 EIF2B1Q14232 305 aaKnown RBP18.56■□□□□ 0.56
CLN3-207ENST00000395653 ALKBH6Q3KRA9 238 aa18.56■□□□□ 0.56
CLN3-207ENST00000395653 LCN1P1Q5VSP4 162 aa18.56■□□□□ 0.56
CLN3-207ENST00000395653 NXNL2Q5VZ03 156 aa18.56■□□□□ 0.56
CLN3-207ENST00000395653 RHOUQ7L0Q8 258 aa18.56■□□□□ 0.56
CLN3-207ENST00000395653 ZNF454Q8N9F8 522 aa18.56■□□□□ 0.56
CLN3-207ENST00000395653 FAM168AQ92567 244 aa18.56■□□□□ 0.56
CLN3-207ENST00000395653 ZNF799Q96GE5 643 aa18.56■□□□□ 0.56
CLN3-207ENST00000395653 TEAD3Q99594 435 aa18.56■□□□□ 0.56
CLN3-207ENST00000395653 COPS4Q9BT78 406 aa18.56■□□□□ 0.56
CLN3-207ENST00000395653 ABHD6Q9BV23 337 aa18.56■□□□□ 0.56
CLN3-207ENST00000395653 CYSLTR2Q9NS75 346 aa18.56■□□□□ 0.56
CLN3-207ENST00000395653 MED13LQ71F56 2210 aa18.55■□□□□ 0.56
CLN3-207ENST00000395653 M0R129 80 aa18.55■□□□□ 0.56
CLN3-207ENST00000395653 LIPAP38571 399 aa18.55■□□□□ 0.56
CLN3-207ENST00000395653 SLC15A1P46059 708 aa18.55■□□□□ 0.56
CLN3-207ENST00000395653 PDLIM4P50479 330 aa18.55■□□□□ 0.56
CLN3-207ENST00000395653 MMP15P51511 669 aa18.55■□□□□ 0.56
CLN3-207ENST00000395653 DRAM2Q6UX65 266 aa18.55■□□□□ 0.56
CLN3-207ENST00000395653 FBXW12Q6X9E4 464 aa18.55■□□□□ 0.56
CLN3-207ENST00000395653 CIARTQ8N365 385 aaPredicted RBP18.55■□□□□ 0.56
CLN3-207ENST00000395653 OTOSQ8NHW6 89 aa18.55■□□□□ 0.56
CLN3-207ENST00000395653 C10orf105Q8TEF2 133 aa18.55■□□□□ 0.56
CLN3-207ENST00000395653 RNF133Q8WVZ7 376 aa18.55■□□□□ 0.56
CLN3-207ENST00000395653 KCNJ15Q99712 375 aa18.55■□□□□ 0.56
CLN3-207ENST00000395653 CENPMQ9NSP4 180 aa18.55■□□□□ 0.56
CLN3-207ENST00000395653 IGHV4-30-2A0A087WSY4 118 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 PLSCR5A0PG75 271 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 CCDC182A6NF36 153 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 NDUFS8O00217 210 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 BAG2O95816 211 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 INHBBP09529 407 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 DAOP14920 347 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 RAC2P15153 192 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 KITLGP21583 273 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 GRB2P62993 217 aaKnown RBP18.54■□□□□ 0.56
CLN3-207ENST00000395653 TAF13Q15543 124 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 PCGF3Q3KNV8 242 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 AADACL4Q5VUY2 407 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 EME1Q96AY2 570 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 HAVCR1Q96D42 359 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 CMBLQ96DG6 245 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 IL4I1Q96RQ9 567 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 REG4Q9BYZ8 158 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 TOR3AQ9H497 397 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 NKIRAS2Q9NYR9 191 aa18.54■□□□□ 0.56
CLN3-207ENST00000395653 H2AFY2Q9P0M6 372 aaPredicted RBP18.54■□□□□ 0.56
CLN3-207ENST00000395653 LOC390937A0A1W2PQ73 354 aa18.53■□□□□ 0.56
CLN3-207ENST00000395653 SLC22A31A6NKX4 558 aa18.53■□□□□ 0.56
CLN3-207ENST00000395653 TIMM8AO60220 97 aaPredicted RBP18.53■□□□□ 0.56
CLN3-207ENST00000395653 LCATP04180 440 aa18.53■□□□□ 0.56
CLN3-207ENST00000395653 SLC25A16P16260 332 aa18.53■□□□□ 0.56
CLN3-207ENST00000395653 NAA10P41227 235 aaPredicted RBP18.53■□□□□ 0.56
CLN3-207ENST00000395653 ZNF81P51508 661 aa18.53■□□□□ 0.56
CLN3-207ENST00000395653 GGTLC2Q14390 218 aa18.53■□□□□ 0.56
CLN3-207ENST00000395653 ZMAT1Q5H9K5 638 aa18.53■□□□□ 0.56
CLN3-207ENST00000395653 ZBTB49Q6ZSB9 765 aa18.53■□□□□ 0.56
CLN3-207ENST00000395653 MEPCEQ7L2J0 689 aaKnown RBP18.53■□□□□ 0.56
CLN3-207ENST00000395653 SLC16A9Q7RTY1 509 aa18.53■□□□□ 0.56
CLN3-207ENST00000395653 NAA40Q86UY6 237 aa18.53■□□□□ 0.56
CLN3-207ENST00000395653 OR8J1Q8NGP2 316 aa18.53■□□□□ 0.56
CLN3-207ENST00000395653 HRASLS5Q96KN8 279 aa18.53■□□□□ 0.56
CLN3-207ENST00000395653 PTTG3PQ9NZH4 202 aa18.53■□□□□ 0.56
CLN3-207ENST00000395653 PURGQ9UJV8 347 aaKnown RBP18.53■□□□□ 0.56
CLN3-207ENST00000395653 ANKRD65E5RJM6 399 aa18.52■□□□□ 0.56
CLN3-207ENST00000395653 RNF223E7ERA6 249 aa18.52■□□□□ 0.56
CLN3-207ENST00000395653 LYNP07948 512 aa18.52■□□□□ 0.56
CLN3-207ENST00000395653 SLC6A9P48067 706 aa18.52■□□□□ 0.56
CLN3-207ENST00000395653 CDC42P60953 191 aa18.52■□□□□ 0.56
CLN3-207ENST00000395653 BCDIN3DQ7Z5W3 292 aaKnown RBP18.52■□□□□ 0.56
CLN3-207ENST00000395653 GID4Q8IVV7 300 aa18.52■□□□□ 0.56
CLN3-207ENST00000395653 ZNF786Q8N393 782 aa18.52■□□□□ 0.56
CLN3-207ENST00000395653 UBASH3BQ8TF42 649 aa18.52■□□□□ 0.56
CLN3-207ENST00000395653 AMELYQ99218 206 aa18.52■□□□□ 0.56
CLN3-207ENST00000395653 SLC29A1Q99808 456 aa18.52■□□□□ 0.56
CLN3-207ENST00000395653 YIPF3Q9GZM5 350 aa18.52■□□□□ 0.56
CLN3-207ENST00000395653 ZSCAN5BA6NJL1 495 aa18.51■□□□□ 0.55
CLN3-207ENST00000395653 E9PQ18 207 aa18.51■□□□□ 0.55
CLN3-207ENST00000395653 HPXP02790 462 aa18.51■□□□□ 0.55
CLN3-207ENST00000395653 ADH4P08319 380 aa18.51■□□□□ 0.55
CLN3-207ENST00000395653 OPRL1P41146 370 aa18.51■□□□□ 0.55
CLN3-207ENST00000395653 MAGEB1P43366 347 aa18.51■□□□□ 0.55
CLN3-207ENST00000395653 PRKXP51817 358 aa18.51■□□□□ 0.55
CLN3-207ENST00000395653 MALLQ13021 153 aa18.51■□□□□ 0.55
CLN3-207ENST00000395653 FAM209AQ5JX71 171 aa18.51■□□□□ 0.55
CLN3-207ENST00000395653 SPATC1Q76KD6 591 aa18.51■□□□□ 0.55
CLN3-207ENST00000395653 BIVMQ86UB2 503 aa18.51■□□□□ 0.55
CLN3-207ENST00000395653 THEM6Q8WUY1 208 aa18.51■□□□□ 0.55
CLN3-207ENST00000395653 TRUB1Q8WWH5 349 aaKnown RBP18.51■□□□□ 0.55
CLN3-207ENST00000395653 GTF3AQ92664 365 aaKnown RBP18.51■□□□□ 0.55
CLN3-207ENST00000395653 PIMREGQ9BSJ6 248 aa18.51■□□□□ 0.55
CLN3-207ENST00000395653 NCR1O76036 304 aa18.5■□□□□ 0.55
CLN3-207ENST00000395653 APOC1P02654 83 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms