RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ACOT12Q8WYK0 555 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 C11orf24Q96F05 449 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-205ENST00000392004 OXGR1Q96P68 337 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 NUDT15Q9NV35 164 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 TREM2Q9NZC2 230 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 ICAM5Q9UMF0 924 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 LIPGQ9Y5X9 500 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 SPTBN5Q9NRC6 3674 aaKnown RBP9.19□□□□□ -0.94
COL6A3-205ENST00000392004 FREM3P0C091 2139 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 ACOD1A6NK06 481 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 ZNF814B7Z6K7 855 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 GRPP07492 148 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 TBR1Q16650 682 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 SLC36A2Q495M3 483 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 PEAR1Q5VY43 1037 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-205ENST00000392004 MEPCEQ7L2J0 689 aaKnown RBP9.18□□□□□ -0.94
COL6A3-205ENST00000392004 TMEM200AQ86VY9 491 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 PRR18Q8N4B5 295 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 ORAI1Q96D31 301 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 GPR137Q96N19 417 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 PDCD1LG2Q9BQ51 273 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 THAP7Q9BT49 309 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-205ENST00000392004 HCAR1Q9BXC0 346 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 C1orf198Q9H425 327 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 FKRPQ9H9S5 495 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 MEPEQ9NQ76 525 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-205ENST00000392004 REV1Q9UBZ9 1251 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 KCNG2Q9UJ96 466 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 PHF3Q92576 2039 aaKnown RBP9.18□□□□□ -0.94
COL6A3-205ENST00000392004 PINLYPA6NC86 204 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 DHHO43323 396 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 ZIC2O95409 532 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-205ENST00000392004 CRYAAP02489 173 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 LIMS1P48059 325 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 RAB1AP62820 205 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 RIPPLY1Q0D2K3 151 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 OPN3Q9H1Y3 402 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-205ENST00000392004 OR14J1Q9UGF5 321 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 MGAQ8IWI9 3026 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 REV3LO60673 3130 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 TMEM129A0AVI4 362 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 OR6C65A6NJZ3 312 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 FTCDNL1E5RQL4 147 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 P2RY10O00398 339 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 RER1O15258 196 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 SGCEO43556 437 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 CDC14BO60729 498 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 VAMP5O95183 116 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 POU4F2Q12837 409 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 AANATQ16613 207 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 WDR88Q6ZMY6 472 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 KCTD20Q7Z5Y7 419 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 PAQR8Q8TEZ7 354 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 ZNF285Q96NJ3 590 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 ATF6BQ99941 703 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 ISYNA1Q9NPH2 558 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 KCNJ16Q9NPI9 418 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 ZMAT5Q9UDW3 170 aaKnown RBP9.18□□□□□ -0.94
COL6A3-205ENST00000392004 CACNG2Q9Y698 323 aa9.18□□□□□ -0.94
COL6A3-205ENST00000392004 ATP6V1G2-DDX39BF2Z307 99 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 RAMP1O60894 148 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 ADRB1P08588 477 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 CTRB1P17538 263 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 SSTR2P30874 369 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 ACAA2P42765 397 aaKnown RBP9.17□□□□□ -0.94
COL6A3-205ENST00000392004 HIKESHIQ53FT3 197 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 CTRB2Q6GPI1 263 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 WDSUB1Q8N9V3 476 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 OR13C9Q8NGT0 318 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 BAIAP2Q9UQB8 552 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 A0A087WZY1 265 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 K7EM74 188 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 M0R233 179 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 GABRPO00591 440 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 FGF9P31371 208 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-205ENST00000392004 ZNF136P52737 540 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 PLPPR5Q32ZL2 321 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 MRGPRGQ86SM5 289 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 OR6V1Q8N148 313 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 TOMM5Q8N4H5 51 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 SAMD12Q8N8I0 201 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 NFAM1Q8NET5 270 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-205ENST00000392004 SNRNP40Q96DI7 357 aaKnown RBP9.17□□□□□ -0.94
COL6A3-205ENST00000392004 OR2M2Q96R28 347 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 GPA33Q99795 319 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 ARHGDIGQ99819 225 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 CHRNA10Q9GZZ6 450 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 SLC26A1Q9H2B4 701 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 NGBQ9NPG2 151 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 AK6Q9Y3D8 172 aaKnown RBP9.17□□□□□ -0.94
COL6A3-205ENST00000392004 CHCHD2Q9Y6H1 151 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-205ENST00000392004 KLK2P20151 261 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 RAC3P60763 192 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 KLRB1Q12918 225 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 ZNF770Q6IQ21 691 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-205ENST00000392004 CXorf67Q86X51 503 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-205ENST00000392004 GPALPP1Q8IXQ4 340 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 PNLDC1Q8NA58 520 aaKnown RBP9.17□□□□□ -0.94
COL6A3-205ENST00000392004 OR4M2Q8NGB6 313 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 SLC25A44Q96H78 314 aaPredicted RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms