RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 OR10A4Q9H209 315 aa19.12■□□□□ 0.65
TRIM54-202ENST00000380075 GPN1Q9HCN4 374 aaPredicted RBP19.12■□□□□ 0.65
TRIM54-202ENST00000380075 TRAV18A0A075B6X5 111 aa19.12■□□□□ 0.65
TRIM54-202ENST00000380075 A0A1W2PPL8 197 aa19.12■□□□□ 0.65
TRIM54-202ENST00000380075 ZNF878C9JN71 531 aa19.12■□□□□ 0.65
TRIM54-202ENST00000380075 SMLR1H3BR10 107 aa19.12■□□□□ 0.65
TRIM54-202ENST00000380075 SULT2B1O00204 365 aa19.12■□□□□ 0.65
TRIM54-202ENST00000380075 ICMTO60725 284 aa19.12■□□□□ 0.65
TRIM54-202ENST00000380075 VEGFCP49767 419 aa19.12■□□□□ 0.65
TRIM54-202ENST00000380075 ACTBP60709 375 aa19.12■□□□□ 0.65
TRIM54-202ENST00000380075 ACTG1P63261 375 aa19.12■□□□□ 0.65
TRIM54-202ENST00000380075 CAMK2DQ13557 499 aa19.12■□□□□ 0.65
TRIM54-202ENST00000380075 HIST3H3Q16695 136 aa19.12■□□□□ 0.65
TRIM54-202ENST00000380075 ZNF782Q6ZMW2 699 aaPredicted RBP19.12■□□□□ 0.65
TRIM54-202ENST00000380075 GPAT4Q86UL3 456 aa19.12■□□□□ 0.65
TRIM54-202ENST00000380075 ARMC10Q8N2F6 343 aa19.12■□□□□ 0.65
TRIM54-202ENST00000380075 PIAS4Q8N2W9 510 aaPredicted RBP19.12■□□□□ 0.65
TRIM54-202ENST00000380075 C9orf62Q8N4C0 152 aa19.12■□□□□ 0.65
TRIM54-202ENST00000380075 PAQR8Q8TEZ7 354 aa19.12■□□□□ 0.65
TRIM54-202ENST00000380075 ATG5Q9H1Y0 275 aa19.12■□□□□ 0.65
TRIM54-202ENST00000380075 GDF2Q9UK05 429 aaPredicted RBP19.12■□□□□ 0.65
TRIM54-202ENST00000380075 HSPB11Q9Y547 144 aa19.12■□□□□ 0.65
TRIM54-202ENST00000380075 FREM3P0C091 2139 aa19.11■□□□□ 0.65
TRIM54-202ENST00000380075 ALPK2Q86TB3 2170 aa19.11■□□□□ 0.65
TRIM54-202ENST00000380075 ZNF726A6NNF4 738 aa19.11■□□□□ 0.65
TRIM54-202ENST00000380075 ARPC1BO15143 372 aaKnown RBP19.11■□□□□ 0.65
TRIM54-202ENST00000380075 ACSM4P0C7M7 580 aa19.11■□□□□ 0.65
TRIM54-202ENST00000380075 CPN1P15169 458 aa19.11■□□□□ 0.65
TRIM54-202ENST00000380075 CXCL3P19876 107 aa19.11■□□□□ 0.65
TRIM54-202ENST00000380075 FOLR3P41439 243 aa19.11■□□□□ 0.65
TRIM54-202ENST00000380075 DSCR4P56555 118 aaPredicted RBP19.11■□□□□ 0.65
TRIM54-202ENST00000380075 LINC00303Q3SY05 128 aa19.11■□□□□ 0.65
TRIM54-202ENST00000380075 GLDNQ6ZMI3 551 aaPredicted RBP19.11■□□□□ 0.65
TRIM54-202ENST00000380075 TIPARPQ7Z3E1 657 aaKnown RBP19.11■□□□□ 0.65
TRIM54-202ENST00000380075 OR5M1Q8NGP8 315 aa19.11■□□□□ 0.65
TRIM54-202ENST00000380075 SORCS2Q96PQ0 1159 aa19.11■□□□□ 0.65
TRIM54-202ENST00000380075 SCPEP1Q9HB40 452 aa19.11■□□□□ 0.65
TRIM54-202ENST00000380075 SH2D2AQ9NP31 389 aa19.11■□□□□ 0.65
TRIM54-202ENST00000380075 ZFP64Q9NPA5 681 aa19.11■□□□□ 0.65
TRIM54-202ENST00000380075 SCP2D1Q9UJQ7 156 aa19.11■□□□□ 0.65
TRIM54-202ENST00000380075 FLVCR2Q9UPI3 526 aa19.11■□□□□ 0.65
TRIM54-202ENST00000380075 POLR1DQ9Y2S0 133 aa19.11■□□□□ 0.65
TRIM54-202ENST00000380075 NSG1A0A0A6YYJ2 146 aa19.1■□□□□ 0.65
TRIM54-202ENST00000380075 SNRPGP15A8MWD9 76 aa19.1■□□□□ 0.65
TRIM54-202ENST00000380075 P2RY10O00398 339 aa19.1■□□□□ 0.65
TRIM54-202ENST00000380075 LDLRAD4O15165 306 aa19.1■□□□□ 0.65
TRIM54-202ENST00000380075 TTRP02766 147 aa19.1■□□□□ 0.65
TRIM54-202ENST00000380075 RAB6AP20340 208 aa19.1■□□□□ 0.65
TRIM54-202ENST00000380075 HSD11B1P28845 292 aa19.1■□□□□ 0.65
TRIM54-202ENST00000380075 SFTPDP35247 375 aa19.1■□□□□ 0.65
TRIM54-202ENST00000380075 PSMA6P60900 246 aaKnown RBP19.1■□□□□ 0.65
TRIM54-202ENST00000380075 RBMS2Q15434 407 aaKnown RBP19.1■□□□□ 0.65
TRIM54-202ENST00000380075 ZNF767PQ75MW2 155 aa19.1■□□□□ 0.65
TRIM54-202ENST00000380075 BEST4Q8NFU0 473 aa19.1■□□□□ 0.65
TRIM54-202ENST00000380075 ZNF431Q8TF32 576 aaPredicted RBP19.1■□□□□ 0.65
TRIM54-202ENST00000380075 PBOV1Q9GZY1 135 aa19.1■□□□□ 0.65
TRIM54-202ENST00000380075 SLCO5A1Q9H2Y9 848 aa19.1■□□□□ 0.65
TRIM54-202ENST00000380075 EIF1AYO14602 144 aaKnown RBP19.1■□□□□ 0.65
TRIM54-202ENST00000380075 AKAIN1P0CW23 69 aa19.1■□□□□ 0.65
TRIM54-202ENST00000380075 SLC25A25Q6KCM7 469 aa19.1■□□□□ 0.65
TRIM54-202ENST00000380075 SEZ6L2Q6UXD5 910 aa19.1■□□□□ 0.65
TRIM54-202ENST00000380075 LYPD6Q86Y78 171 aa19.1■□□□□ 0.65
TRIM54-202ENST00000380075 GPX8Q8TED1 209 aa19.1■□□□□ 0.65
TRIM54-202ENST00000380075 MRPS18BQ9Y676 258 aaKnown RBP19.1■□□□□ 0.65
TRIM54-202ENST00000380075 LHFPL6Q9Y693 200 aa19.1■□□□□ 0.65
TRIM54-202ENST00000380075 EIF1BO60739 113 aaKnown RBP19.09■□□□□ 0.65
TRIM54-202ENST00000380075 HPXP02790 462 aa19.09■□□□□ 0.65
TRIM54-202ENST00000380075 CELA2AP08217 269 aa19.09■□□□□ 0.65
TRIM54-202ENST00000380075 LIFP15018 202 aa19.09■□□□□ 0.65
TRIM54-202ENST00000380075 RPS19BP1Q86WX3 136 aaKnown RBP19.09■□□□□ 0.65
TRIM54-202ENST00000380075 SPICQ8N5J4 248 aa19.09■□□□□ 0.65
TRIM54-202ENST00000380075 JAGN1Q8N5M9 183 aa19.09■□□□□ 0.65
TRIM54-202ENST00000380075 OR51A2Q8NGJ7 313 aa19.09■□□□□ 0.65
TRIM54-202ENST00000380075 OR10S1Q8NGN2 331 aa19.09■□□□□ 0.65
TRIM54-202ENST00000380075 CDCP1Q9H5V8 836 aa19.09■□□□□ 0.65
TRIM54-202ENST00000380075 SEC61A2Q9H9S3 476 aa19.09■□□□□ 0.65
TRIM54-202ENST00000380075 NPDC1Q9NQX5 325 aaPredicted RBP19.09■□□□□ 0.65
TRIM54-202ENST00000380075 ZNF107Q9UII5 783 aaPredicted RBP19.09■□□□□ 0.65
TRIM54-202ENST00000380075 ZNF814B7Z6K7 855 aa19.08■□□□□ 0.65
TRIM54-202ENST00000380075 STMND1H3BQB6 276 aa19.08■□□□□ 0.65
TRIM54-202ENST00000380075 SYT7O43581 403 aa19.08■□□□□ 0.65
TRIM54-202ENST00000380075 KDM4BO94953 1096 aa19.08■□□□□ 0.65
TRIM54-202ENST00000380075 VAMP5O95183 116 aa19.08■□□□□ 0.65
TRIM54-202ENST00000380075 OPN1LWP04000 364 aa19.08■□□□□ 0.65
TRIM54-202ENST00000380075 ZNF17P17021 662 aa19.08■□□□□ 0.65
TRIM54-202ENST00000380075 BDKRB2P30411 391 aa19.08■□□□□ 0.65
TRIM54-202ENST00000380075 EIF1AXP47813 144 aaKnown RBP19.08■□□□□ 0.65
TRIM54-202ENST00000380075 MLF1P58340 268 aa19.08■□□□□ 0.65
TRIM54-202ENST00000380075 H3F3AP84243 136 aa19.08■□□□□ 0.65
TRIM54-202ENST00000380075 FOXK1P85037 733 aa19.08■□□□□ 0.65
TRIM54-202ENST00000380075 SPOCK1Q08629 439 aa19.08■□□□□ 0.65
TRIM54-202ENST00000380075 BIVMQ86UB2 503 aa19.08■□□□□ 0.65
TRIM54-202ENST00000380075 TMEM156Q8N614 296 aa19.08■□□□□ 0.65
TRIM54-202ENST00000380075 OR4C16Q8NGL9 310 aa19.08■□□□□ 0.65
TRIM54-202ENST00000380075 UQCC2Q9BRT2 126 aa19.08■□□□□ 0.65
TRIM54-202ENST00000380075 ZNF436Q9C0F3 470 aaPredicted RBP19.08■□□□□ 0.65
TRIM54-202ENST00000380075 TMEM165Q9HC07 324 aa19.08■□□□□ 0.65
TRIM54-202ENST00000380075 DLL4Q9NR61 685 aa19.08■□□□□ 0.65
TRIM54-202ENST00000380075 CGGBP1Q9UFW8 167 aaPredicted RBP19.08■□□□□ 0.65
TRIM54-202ENST00000380075 MGAT4AQ9UM21 535 aa19.08■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms