RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 KIR3DX1Q9H7L2 352 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 HCFC2Q9Y5Z7 792 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 ABHD16AO95870 558 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 CDK5Q00535 292 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 FABP9Q0Z7S8 132 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 ENDOGQ14249 297 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 SLC17A1Q14916 467 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 PRTGQ2VWP7 1150 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 MUC20Q8N307 709 aaPredicted RBP17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 VPS25Q9BRG1 176 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 SUSD2Q9UGT4 822 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 KIAA0100Q14667 2235 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 FZD6O60353 706 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 SSBP1Q04837 148 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 RSPO2Q6UXX9 243 aaPredicted RBP17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 TSLPQ969D9 159 aa17.75■□□□□ 0.43
CCDC88B-202ENST00000356786 FABP6P51161 128 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 EEF1A2Q05639 463 aaKnown RBP17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 PJVKQ0ZLH3 352 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 PCK2Q16822 640 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 ADIPOR2Q86V24 386 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 HDAC8Q9BY41 377 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 MMP24Q9Y5R2 645 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 H0Y8G0 127 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 SLC17A2O00624 439 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 MEOX2P50222 304 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 TVP23CQ96ET8 276 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 SMIM7Q9BQ49 75 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 TMEM127O75204 238 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 ABLIM3O94929 683 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 YPEL5P62699 121 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 TMEM268Q5VZI3 342 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 NHLRC1Q6VVB1 395 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 BATF2Q8N1L9 274 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 OR10D4PQ8NGN7 298 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 FGF22Q9HCT0 170 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 CHST11Q9NPF2 352 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 EIF4E2O60573 245 aaKnown RBP17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 HMGA2P52926 109 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 LBX1P52954 281 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 FAM78AQ5JUQ0 283 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 GOT1L1Q8NHS2 421 aaPredicted RBP17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 SEMA6CQ9H3T2 930 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 MYOTQ9UBF9 498 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 DNAJC13O75165 2243 aa17.74■□□□□ 0.43
CCDC88B-202ENST00000356786 KIR2DS1A0A191URI9 304 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 A0A1W2PPQ1 181 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 OR5H8P0DN80 308 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 KIR2DS4P43632 304 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 KIR2DS1Q14954 304 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 FAM26DQ5JW98 314 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 FAM209AQ5JX71 171 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 OR4D10Q8NGI6 311 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 CCNL2Q96S94 520 aaPredicted RBP17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 IGHA2P01877 340 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 FOLR3P41439 243 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 NPBWR1P48145 328 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 TMEM128Q5BJH2 165 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 OR4A16Q8NH70 328 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 AKR7LQ8NHP1 331 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 MBNL1Q9NR56 388 aaKnown RBP17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 SLCO1C1Q9NYB5 712 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 V9GYS6 101 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 SSSCA1O60232 199 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 GLSO94925 669 aaPredicted RBP17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 GALP22466 123 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 CPEB4Q17RY0 729 aaKnown RBP eCLIP17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 MANEAQ5SRI9 462 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 GCNT2Q8N0V5 402 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 TMEM229BQ8NBD8 167 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 REEP6Q96HR9 211 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 V9GYH0 126 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 GPR31O00270 319 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 PPM1DO15297 605 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 HSD17B7P56937 341 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 SLC16A13Q7RTY0 426 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 ZNF610Q8N9Z0 462 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 GPR32P1Q8NGA4 272 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 SCMH1Q96GD3 660 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 GPR173Q9NS66 373 aa17.73■□□□□ 0.43
CCDC88B-202ENST00000356786 G3V3Y1 287 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 EFSO43281 561 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 CA3P07451 260 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 HOXA1P49639 335 aaPredicted RBP17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 ZNF85Q03923 595 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 PLPP6Q8IY26 295 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 SEMA6DQ8NFY4 1073 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 CA14Q9ULX7 337 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 LAMP3Q9UQV4 416 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 EVPLQ92817 2033 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 TPRP12270 2363 aaKnown RBP17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 ZNF816-ZNF321PA0A0X1KG74 233 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 TCRBV16S1A1N1A0A5B0 115 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 PLPP2O43688 288 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 MBP02144 154 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 GUSBP08236 651 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 CXCL3P19876 107 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 HSD17B13Q7Z5P4 300 aaPredicted RBP17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 THNSL2Q86YJ6 484 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 SPICQ8N5J4 248 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms