RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 PIGXQ8TBF5 258 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 ADAMTS15Q8TE58 950 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 RNF133Q8WVZ7 376 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 LZICQ8WZA0 190 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 GHSRQ92847 366 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 TCEAL3Q969E4 200 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 MMABQ96EY8 250 aaPredicted RBP2.01□□□□□ -2.09
VPS54-202ENST00000354504 C4orf45Q96LM5 186 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 C5orf34Q96MH7 638 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 HIST1H2AAQ96QV6 131 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 COQ7Q99807 217 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 KCNS3Q9BQ31 491 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 PIGQQ9BRB3 760 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 REG4Q9BYZ8 158 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 TBL1XR1Q9BZK7 514 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 OR11A1Q9GZK7 315 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 AUNIPQ9H7T9 357 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 NOX3Q9HBY0 568 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 C14orf105Q9NVL8 296 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 KLHL21Q9UJP4 597 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 SLC9A8Q9Y2E8 581 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 FAM32AQ9Y421 112 aaKnown RBP2.01□□□□□ -2.09
VPS54-202ENST00000354504 CMAHPQ9Y471 501 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 N6AMT1Q9Y5N5 214 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 IER3IP1Q9Y5U9 82 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 V9GYS6 101 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 PCNX2A6NKB5 2137 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 ANKRD20A5PA0PJZ0 165 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 ZNF726A6NNF4 738 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 H7C1C5 153 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 FCN3O75636 299 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 CDRT1O95170 752 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 MPC2O95563 127 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 TK1P04183 234 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 CD74P04233 296 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 CHRM2P08172 466 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 TRAPPC2P0DI81 140 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 TRAPPC2BP0DI82 140 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 PNMTP11086 282 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 NAGAP17050 411 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 CXCL3P19876 107 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 AVPR2P30518 371 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 RPS5P46782 204 aaKnown RBP2.01□□□□□ -2.09
VPS54-202ENST00000354504 SRP9P49458 86 aaKnown RBP2.01□□□□□ -2.09
VPS54-202ENST00000354504 CCR9P51686 369 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 MLF1P58340 268 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 SMIM11AP58511 58 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 DCAF7P61962 342 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 LCN6P62502 163 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 ERVK-25P63136 954 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 CRYZQ08257 329 aaKnown RBP2.01□□□□□ -2.09
VPS54-202ENST00000354504 LGALS3BPQ08380 585 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 SIGLEC14Q08ET2 396 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 FOXF1Q12946 379 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 SERTAD2Q14140 314 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 GPR176Q14439 515 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 HLXQ14774 488 aaPredicted RBP2.01□□□□□ -2.09
VPS54-202ENST00000354504 MED22Q15528 200 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 MEP1BQ16820 701 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 ZSWIM7Q19AV6 140 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 GSG1Q2KHT4 349 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 COL28A1Q2UY09 1125 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 KLHL22Q53GT1 634 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 PDSS1Q5T2R2 415 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 AGAP6Q5VW22 663 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 FAM205BPQ63HN1 556 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 SIGIRRQ6IA17 410 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 CNIH2Q6PI25 160 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 RTL4Q6ZR62 310 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 ADCK1Q86TW2 530 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 MYPOPQ86VE0 399 aaPredicted RBP2.01□□□□□ -2.09
VPS54-202ENST00000354504 C1orf210Q8IVY1 113 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 SLC35F2Q8IXU6 374 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 PM20D2Q8IYS1 436 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 C9orf62Q8N4C0 152 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 FAM89BQ8N5H3 189 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 COX18Q8N8Q8 333 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 POMGNT2Q8NAT1 580 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 LSM14AQ8ND56 463 aaKnown RBP2.01□□□□□ -2.09
VPS54-202ENST00000354504 OR51G2Q8NGK0 314 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 S100ZQ8WXG8 99 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 ST8SIA4Q92187 359 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 AQP3Q92482 292 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 ZMYND19Q96E35 227 aaPredicted RBP2.01□□□□□ -2.09
VPS54-202ENST00000354504 ZHX1-C8orf76Q96EF9 292 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 GPR137Q96N19 417 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 AGAP4Q96P64 663 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 OR8B4Q96RC9 309 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 TRIM2Q9C040 744 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 CCDC90BQ9GZT6 254 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 ING2Q9H160 280 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 SLC25A18Q9H1K4 315 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 TXNIPQ9H3M7 391 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 VCX3AQ9NNX9 186 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 PDE7BQ9NP56 450 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 ASCL3Q9NQ33 180 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 SLC17A5Q9NRA2 495 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 FGF21Q9NSA1 209 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 FBXO4Q9UKT5 387 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 BLOC1S6Q9UL45 172 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms