RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 DOK5Q9P104 306 aa11.55□□□□□ -0.56
COL6A3-203ENST00000353578 PMP2P02689 132 aa11.55□□□□□ -0.56
COL6A3-203ENST00000353578 INPP5JQ15735 1006 aaPredicted RBP11.55□□□□□ -0.56
COL6A3-203ENST00000353578 NXPE3Q969Y0 559 aa11.55□□□□□ -0.56
COL6A3-203ENST00000353578 LINC00052Q96N35 136 aa11.55□□□□□ -0.56
COL6A3-203ENST00000353578 HEYLQ9NQ87 328 aaPredicted RBP11.55□□□□□ -0.56
COL6A3-203ENST00000353578 NKAIN2Q5VXU1 208 aa11.55□□□□□ -0.56
COL6A3-203ENST00000353578 CDK2AP1O14519 115 aa11.55□□□□□ -0.56
COL6A3-203ENST00000353578 EIF1P41567 113 aaKnown RBP11.55□□□□□ -0.56
COL6A3-203ENST00000353578 OR2M7Q8NG81 312 aa11.55□□□□□ -0.56
COL6A3-203ENST00000353578 AMBRA1Q9C0C7 1298 aa11.55□□□□□ -0.56
COL6A3-203ENST00000353578 PRO1933Q9H354 126 aa11.55□□□□□ -0.56
COL6A3-203ENST00000353578 PEF1Q9UBV8 284 aaKnown RBP11.55□□□□□ -0.56
COL6A3-203ENST00000353578 TMEM184BQ9Y519 407 aaPredicted RBP11.55□□□□□ -0.56
COL6A3-203ENST00000353578 HIST1H1TP22492 207 aaPredicted RBP11.54□□□□□ -0.56
COL6A3-203ENST00000353578 IL10RAQ13651 578 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 MTMR14Q8NCE2 650 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 OR52L2PQ8NGH6 319 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 DCBLD2Q96PD2 775 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 ADGRL4Q9HBW9 690 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 VDAC3Q9Y277 283 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 LOC390937A0A1W2PQ73 354 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 B4GALT2O60909 372 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 INHBBP09529 407 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 LIPCP11150 499 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 SELPP16109 830 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 GPR152Q8TDT2 470 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 ASB11Q8WXH4 323 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 CMC2Q9NRP2 79 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 ISLRO14498 428 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 FBLP22087 321 aaKnown RBP11.54□□□□□ -0.56
COL6A3-203ENST00000353578 HOXA6P31267 233 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 F2RL3Q96RI0 385 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 IER2Q9BTL4 223 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 MARCH5Q9NX47 278 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 SSC5DA1L4H1 1573 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 WNK3Q9BYP7 1800 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 MPC2O95563 127 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 HMGN2P05204 90 aaKnown RBP11.54□□□□□ -0.56
COL6A3-203ENST00000353578 POLR2GP62487 172 aaKnown RBP eCLIP11.54□□□□□ -0.56
COL6A3-203ENST00000353578 ZNF573Q86YE8 665 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 SCAMP5Q8TAC9 235 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 MARCH4Q9P2E8 410 aaPredicted RBP11.54□□□□□ -0.56
COL6A3-203ENST00000353578 SLC5A6Q9Y289 635 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 LRP6O75581 1613 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 FREM3P0C091 2139 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 TRBV9A0A0B4J1U6 114 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 M0QYG6 137 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 SIGLEC5O15389 551 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 LIPFP07098 398 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 AQP6Q13520 282 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 CHST14Q8NCH0 376 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 TOPAZ1Q8N9V7 1692 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 TRAPPC6AO75865 159 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 OR1D4P47884 311 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 SDHAF4Q5VUM1 108 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 CYHR1Q6ZMK1 362 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 MSLNLQ96KJ4 702 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 NIPSNAP1Q9BPW8 284 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 ZNF391Q9UJN7 358 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 WASHC3Q9Y3C0 194 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 TNRC6CQ9HCJ0 1690 aaKnown RBP11.54□□□□□ -0.56
COL6A3-203ENST00000353578 DBX1A6NMT0 343 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 PTP4A3O75365 173 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 OPN1LWP04000 364 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 TMEM11P17152 192 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 CEBPBP17676 345 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 CSNK1DP48730 415 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 ARSIQ5FYB1 569 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 TREML2Q5T2D2 321 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 FAM182BQ5T319 152 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 PRSS54Q6PEW0 395 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 SUSD1Q6UWL2 747 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 KHDC3LQ587J8 217 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 ZCCHC14Q8WYQ9 949 aaKnown RBP11.54□□□□□ -0.56
COL6A3-203ENST00000353578 PRRX2Q99811 253 aa11.54□□□□□ -0.56
COL6A3-203ENST00000353578 OR7C2O60412 319 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 NEIL1Q96FI4 390 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-203ENST00000353578 TBX21Q9UL17 535 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 A0A1B0GTQ1 180 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 Q7L0L9 218 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 CHST2Q9Y4C5 530 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 IL1F10Q8WWZ1 152 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 FAM71F1Q96KD3 344 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-203ENST00000353578 RNF2Q99496 336 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 DEFB126Q9BYW3 111 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 ALX4Q9H161 411 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-203ENST00000353578 SLC45A2Q9UMX9 530 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 MRPL42Q9Y6G3 142 aaKnown RBP11.53□□□□□ -0.56
COL6A3-203ENST00000353578 A0A1W2PN81 502 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 PRICKLE3O43900 615 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-203ENST00000353578 CHRNA7P36544 502 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 FAM24BQ8N5W8 94 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 ZFP30Q9Y2G7 519 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 HRH1P35367 487 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 OR8G2PQ6IF36 304 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 DLEU7Q6UYE1 221 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 SLC35A4Q96G79 324 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 SPANXCQ9NY87 97 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 Q9Y3F1 56 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms