RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 EXD3Q8N9H8 876 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 OR6K3Q8NGY3 331 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 RBM14Q96PK6 669 aaKnown RBP11.49□□□□□ -0.57
SDC3-201ENST00000336798 URB1O60287 2271 aaKnown RBP11.49□□□□□ -0.57
SDC3-201ENST00000336798 OR2C1O95371 312 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 NRASP01111 189 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 ATP1B1P05026 303 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 B4GALT1P15291 398 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 S100A11P31949 105 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 RPL13AP40429 203 aaKnown RBP11.49□□□□□ -0.57
SDC3-201ENST00000336798 ELAVL1Q15717 326 aaKnown RBP11.49□□□□□ -0.57
SDC3-201ENST00000336798 GPR32P1Q8NGA4 272 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 MS4A6EQ96DS6 147 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 TIMM9Q9Y5J7 89 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 SHISA8B8ZZ34 492 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 SPRY1O43609 319 aaPredicted RBP11.49□□□□□ -0.57
SDC3-201ENST00000336798 H2AFB1P0C5Y9 115 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 LIPNQ5VXI9 398 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 FAM71E1Q6IPT2 247 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 ADAM5Q6NVV9 412 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 TDHQ8IZJ6 230 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 L3MBTL4Q8NA19 623 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 ZNF784Q8NCA9 323 aaPredicted RBP11.49□□□□□ -0.57
SDC3-201ENST00000336798 GPR84Q9NQS5 396 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 SLCO2B1O94956 709 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 ONECUT2O95948 504 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 CDAP32320 146 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 GNG10P50151 68 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 EMDP50402 254 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 PAQR6Q6TCH4 344 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 SPNS2Q8IVW8 549 aa11.49□□□□□ -0.57
SDC3-201ENST00000336798 A0A1W2PR48 441 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 PMS2P2O95744 297 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 ST6GAL1P15907 406 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 LIPAP38571 399 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 SLC19A1P41440 591 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 PTTG1IPP53801 180 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 PMP22Q01453 160 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 VAMP3Q15836 100 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 PYCR3Q53H96 274 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 ORAI1Q96D31 301 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 OPALINQ96PE5 141 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 UBE2ZQ9H832 354 aaPredicted RBP11.48□□□□□ -0.57
SDC3-201ENST00000336798 PPT2Q9UMR5 302 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 PRRT4C9JH25 899 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 DFFBO76075 338 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 OR2F2O95006 317 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 MT-ATP6P00846 226 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 TFAP2AP05549 437 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 TSEN54Q7Z6J9 526 aaKnown RBP11.48□□□□□ -0.57
SDC3-201ENST00000336798 C1orf87Q8N0U7 546 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 OR52I2Q8NH67 350 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 KCTD12Q96CX2 325 aaKnown RBP11.48□□□□□ -0.57
SDC3-201ENST00000336798 ACY3Q96HD9 319 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 LYSMD1Q96S90 227 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 TEAD3Q99594 435 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 C1QTNF3Q9BXJ4 246 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 RBFOX1Q9NWB1 397 aaKnown RBP11.48□□□□□ -0.57
SDC3-201ENST00000336798 PLA2G3Q9NZ20 509 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 NDRG4Q9ULP0 352 aaKnown RBP11.48□□□□□ -0.57
SDC3-201ENST00000336798 SETD1AO15047 1707 aaKnown RBP11.48□□□□□ -0.57
SDC3-201ENST00000336798 ANKUB1A6NFN9 424 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 DBX1A6NMT0 343 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 M0R135 149 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 PDCD1Q15116 288 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 AANATQ16613 207 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 METRNLQ641Q3 311 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 OR10V1Q8NGI7 309 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 MARC2Q969Z3 335 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 MOB3AQ96BX8 217 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 ZNF799Q96GE5 643 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 IER2Q9BTL4 223 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 LRFN3Q9BTN0 628 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 B3GALT5Q9Y2C3 310 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 GOSR1O95249 250 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 RRASP10301 218 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 PPP2CBP62714 309 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 PPP2CAP67775 309 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 IHHQ14623 411 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 RNF212Q495C1 297 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 TMEM268Q5VZI3 342 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 OR2AK2Q8NG84 335 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 NDFIP1Q9BT67 221 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 COMMD5Q9GZQ3 224 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 DCAF16Q9NXF7 216 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 ZNF785A8K8V0 405 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 OR10A3P58181 314 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 BAK1Q16611 211 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 BTNL8Q6UX41 500 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 TMPRSS11FQ6ZWK6 438 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 FAM122BQ7Z309 247 aa11.48□□□□□ -0.57
SDC3-201ENST00000336798 KLF13Q9Y2Y9 288 aaPredicted RBP11.48□□□□□ -0.57
SDC3-201ENST00000336798 KLK10O43240 276 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 RPS19P39019 145 aaKnown RBP11.47□□□□□ -0.57
SDC3-201ENST00000336798 GFERP55789 205 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 ERHP84090 104 aaKnown RBP11.47□□□□□ -0.57
SDC3-201ENST00000336798 PRDX4Q13162 271 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 SLC35D3Q5M8T2 416 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 MAVSQ7Z434 540 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 DTWD2Q8NBA8 298 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms