RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 C22orf42Q6IC83 251 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 ZNF836Q6ZNA1 936 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 ZNF621Q6ZSS3 439 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 H2AFVQ71UI9 128 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 SLC16A14Q7RTX9 510 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 VTCN1Q7Z7D3 282 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 LINC00523Q86TU6 105 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 MMAAQ8IVH4 418 aaKnown RBP2.13□□□□□ -2.07
HMGB1-201ENST00000326004 MS4A15Q8N5U1 240 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 CCDC54Q8NEL0 328 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 OR2G3Q8NGZ4 309 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 OR8K3Q8NH51 312 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 DTX3LQ8TDB6 740 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 STMN2Q93045 179 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 IL22RA2Q969J5 263 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 TOP1MTQ969P6 601 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 FAM104AQ969W3 186 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 C8orf44Q96CB5 159 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 LRRC39Q96DD0 335 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 C19orf60Q96EN9 201 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 ZNF396Q96N95 335 aaPredicted RBP2.13□□□□□ -2.07
HMGB1-201ENST00000326004 ATP5SQ99766 215 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 SLC29A1Q99808 456 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 KCTD14Q9BQ13 255 aaPredicted RBP2.13□□□□□ -2.07
HMGB1-201ENST00000326004 MRPL37Q9BZE1 423 aaKnown RBP2.13□□□□□ -2.07
HMGB1-201ENST00000326004 OR51M1Q9H341 326 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 C11orf49Q9H6J7 331 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 CCNB1IP1Q9NPC3 277 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 DMAP1Q9NPF5 467 aaPredicted RBP2.13□□□□□ -2.07
HMGB1-201ENST00000326004 PXMP2Q9NR77 195 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 ZNF226Q9NYT6 803 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 KLK12Q9UKR0 248 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 TRAPPC4Q9Y296 219 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 STK38LQ9Y2H1 464 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 FAM208BQ5VWN6 2430 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 PCM1Q15154 2024 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 NAV2Q8IVL1 2488 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 BCORQ6W2J9 1755 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 RGPD5Q99666 1765 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 AK9Q5TCS8 1911 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 ZNF462Q96JM2 2506 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 CFAP47Q6ZTR5 3102 aa2.13□□□□□ -2.07
HMGB1-201ENST00000326004 KIF24Q5T7B8 1368 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 CFAP54Q96N23 3096 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.12□□□□□ -2.07
HMGB1-201ENST00000326004 KBTBD11-OT1A0A1B0GTJ5 212 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 LRRIQ3A6PVS8 624 aaPredicted RBP2.12□□□□□ -2.07
HMGB1-201ENST00000326004 H3BNH8 94 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 GOSR2O14653 212 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 RNF113AO15541 343 aaKnown RBP2.12□□□□□ -2.07
HMGB1-201ENST00000326004 TGM6O95932 706 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 IGHV2-5P01817 119 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 ALDOBP05062 364 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 C2P06681 752 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 SERPINE2P07093 398 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 GKN3PP0CG01 181 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 MYL2P10916 166 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 NEFHP12036 1026 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 BCKDHBP21953 392 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 SLC2A5P22732 501 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 MSNP26038 577 aaKnown RBP2.12□□□□□ -2.07
HMGB1-201ENST00000326004 HMOX2P30519 316 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 BTCP35070 178 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 NAA10P41227 235 aaPredicted RBP2.12□□□□□ -2.07
HMGB1-201ENST00000326004 GPR6P46095 362 aaPredicted RBP2.12□□□□□ -2.07
HMGB1-201ENST00000326004 NPBWR2P48146 333 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 CD151P48509 253 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 NMUP48645 174 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 TMED10P49755 219 aaKnown RBP2.12□□□□□ -2.07
HMGB1-201ENST00000326004 CCNHP51946 323 aaPredicted RBP2.12□□□□□ -2.07
HMGB1-201ENST00000326004 UGT2B15P54855 530 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 FBXW4P57775 412 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 MRPS22P82650 360 aaKnown RBP2.12□□□□□ -2.07
HMGB1-201ENST00000326004 XIAPP98170 497 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 EIF4EBP2Q13542 120 aaPredicted RBP2.12□□□□□ -2.07
HMGB1-201ENST00000326004 SGCAQ16586 387 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 KCTD19Q17RG1 926 aaPredicted RBP2.12□□□□□ -2.07
HMGB1-201ENST00000326004 HNRNPA1L2Q32P51 320 aaKnown RBP2.12□□□□□ -2.07
HMGB1-201ENST00000326004 HSDL1Q3SXM5 330 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 TSPO2Q5TGU0 170 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 OR52W1Q6IF63 320 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 REEP3Q6NUK4 255 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 TRIM40Q6P9F5 258 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 PEX26Q7Z412 305 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 LINC01551Q86U37 167 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 ZNF786Q8N393 782 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 CSGALNACT2Q8N6G5 542 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 SPERTQ8NA61 448 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 DUSP18Q8NEJ0 188 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 OR9G4Q8NGQ1 327 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 MITD1Q8WV92 249 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 TMIGD2Q96BF3 282 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 MS4A4EQ96PG1 132 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 OR8B4Q96RC9 309 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 SORT1Q99523 831 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 SLC17A9Q9BYT1 436 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 IL22Q9GZX6 179 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 OR2AG1Q9H205 316 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 CLMPQ9H6B4 373 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 FGF20Q9NP95 211 aaPredicted RBP2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms