RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 CDC42EP3Q9UKI2 254 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 PLCE1Q9P212 2302 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 TDRD15B5MCY1 1934 aaKnown RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 TRAPPC2LH3BP13 241 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 TUSC2O75896 110 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 GPANK1O95872 356 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 FOLR2P14207 255 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 FSTP19883 344 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 TGFBR1P36897 503 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 SRP14P37108 136 aaKnown RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 MDH2P40926 338 aaKnown RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 KCNJ10P78508 379 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 FAM3AP98173 230 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 FPGSQ05932 587 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 PRDX1Q06830 199 aaKnown RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 SOWAHCQ53LP3 525 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 SCGB1D4Q6XE38 83 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 SLC35E3Q7Z769 313 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 PLXDC1Q8IUK5 500 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 FAM3DQ96BQ1 224 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 HRH4Q9H3N8 390 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 NIT2Q9NQR4 276 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 CLCF1Q9UBD9 225 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 MRPS16Q9Y3D3 137 aaKnown RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 STRCQ7RTU9 1775 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 DOCK3Q8IZD9 2030 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 C5orf52A6NGY3 159 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 RAB27BO00194 218 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 FBP1P09467 338 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 SELEP16581 610 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 HNRNPA2B1P22626 353 aaKnown RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 OR1D2P34982 312 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 PRSS12P56730 875 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 TPPP2P59282 170 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 ERVFC1P60507 584 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 GNB1P62873 340 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 SUMO1P63165 101 aaKnown RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 KIAA0141Q14154 515 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 OR5M10Q6IEU7 315 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 VWA1Q6PCB0 445 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 RNF111Q6ZNA4 994 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF679Q8IYX0 411 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 PGBD5Q8N414 524 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 NUDT10Q8NFP7 164 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 OR2I1PQ8NGU4 316 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 NUDT11Q96G61 164 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 SOX7Q9BT81 388 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 SLC27A5Q9Y2P5 690 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 ZNFX1Q9P2E3 1918 aaKnown RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 M0R3H8 397 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 IGHG1P01857 330 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 C1QAP02745 245 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 PIRTP0C851 137 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 NAT1P18440 290 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 CSRP3P50461 194 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 PLCXD2Q0VAA5 305 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF362Q5T0B9 420 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 C11orf87Q6NUJ2 197 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 JMJD6Q6NYC1 403 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 TMEM81Q6P7N7 255 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 SIGLECL1Q8N7X8 197 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 OR10X1Q8NGY0 326 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 METTL9Q9H1A3 318 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 CLDND1Q9NY35 253 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 B3GAT1Q9P2W7 334 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 TBX21Q9UL17 535 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF443Q9Y2A4 671 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 A6NIN4 97 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 GPX5O75715 221 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 RAB38P57729 211 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 ADAM5Q6NVV9 412 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 VHLLQ6RSH7 139 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 OR10G4Q8NGN3 311 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF707Q96C28 371 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 ARHGDIGQ99819 225 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 PTDSS2Q9BVG9 487 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 TM7SF3Q9NS93 570 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 AMDHD2Q9Y303 409 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 RGPD3A6NKT7 1758 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 RGPD4Q7Z3J3 1758 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 OR6C68A6NDL8 312 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 CD46P15529 392 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 CD80P33681 288 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 ADCYAP1R1P41586 468 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 NRLP54845 237 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 BTG2P78543 158 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 LCN2P80188 198 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 TNFRSF17Q02223 184 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF85Q03923 595 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 TIGITQ495A1 244 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 BTNL8Q6UX41 500 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 SLC38A9Q8NBW4 561 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 SCCPDHQ8NBX0 429 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 SLC38A5Q8WUX1 472 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 NUDCD2Q8WVJ2 157 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 TVP23CQ96ET8 276 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 ARV1Q9H2C2 271 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 GNG12Q9UBI6 72 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 INSL5Q9Y5Q6 135 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 SPTAN1Q13813 2472 aaKnown RBP4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms