RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 ADAMTS18Q8TE60 1221 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 NRSN2Q9GZP1 204 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 OR10A5Q9H207 317 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 FOXJ3Q9UPW0 622 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 PLXNA3P51805 1871 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 PHOX2AO14813 284 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 OR7C1O76099 320 aaPredicted RBP13.91□□□□□ -0.18
SHH-201ENST00000297261 KCNJ3P48549 501 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 ZNF239Q16600 458 aaKnown RBP13.91□□□□□ -0.18
SHH-201ENST00000297261 SYT13Q7L8C5 426 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 TCTN2Q96GX1 697 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 PCDHGA9Q9Y5G4 932 aaKnown RBP13.91□□□□□ -0.18
SHH-201ENST00000297261 MMP24Q9Y5R2 645 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 SPTY2D1-AS1A0A0U1RR47 76 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 ZNF724A8MTY0 619 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 FCGR2AP12318 317 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 ST6GAL1P15907 406 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 RPL12P30050 165 aaKnown RBP13.91□□□□□ -0.18
SHH-201ENST00000297261 OR1D4P47884 311 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 OR52W1Q6IF63 320 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 TMEM182Q6ZP80 229 aaPredicted RBP13.91□□□□□ -0.18
SHH-201ENST00000297261 DPPA2Q7Z7J5 298 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 DDIT4LQ96D03 193 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 TOLLIPQ9H0E2 274 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 RTTNQ86VV8 2226 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 ZFP92A6NM28 416 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 HMSDA8MTL9 139 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 NMBP08949 121 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 CORO6Q6QEF8 472 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 ZNF705AQ6ZN79 300 aaPredicted RBP13.9□□□□□ -0.18
SHH-201ENST00000297261 RBMXL1Q96E39 390 aaKnown RBP13.9□□□□□ -0.18
SHH-201ENST00000297261 ENKD1Q9H0I2 346 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 CHD5Q8TDI0 1954 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 SFTA3P0C7M3 94 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 F2RL1P55085 397 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 RAB11AP62491 216 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 ELFN2Q5R3F8 820 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 KIRREL2Q6UWL6 708 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 NKAIN3Q8N8D7 197 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 OR2G3Q8NGZ4 309 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 RNF128Q8TEB7 428 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 SAMD10Q9BYL1 202 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 DKKL1Q9UK85 242 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 EXOGQ9Y2C4 368 aaKnown RBP13.9□□□□□ -0.18
SHH-201ENST00000297261 TMEM218A2RU14 115 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 ADAM10O14672 748 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 GNB3P16520 340 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 RAB38P57729 211 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 TFF2Q03403 129 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 GAB4Q2WGN9 574 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 UQCC3Q6UW78 93 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 ZNF793Q6ZN11 406 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 FAM24BQ8N5W8 94 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 HSD17B8Q92506 261 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 SDSLQ96GA7 329 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 GDF15Q99988 308 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 ADAT1Q9BUB4 502 aaKnown RBP13.9□□□□□ -0.18
SHH-201ENST00000297261 CA10Q9NS85 328 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 GAR1Q9NY12 217 aaKnown RBP13.9□□□□□ -0.18
SHH-201ENST00000297261 B3GALT5Q9Y2C3 310 aa13.9□□□□□ -0.18
SHH-201ENST00000297261 LSM2Q9Y333 95 aaKnown RBP13.9□□□□□ -0.18
SHH-201ENST00000297261 BET1O15155 118 aa13.9□□□□□ -0.19
SHH-201ENST00000297261 NXPH3O95157 252 aa13.9□□□□□ -0.19
SHH-201ENST00000297261 IL1F10Q8WWZ1 152 aa13.9□□□□□ -0.19
SHH-201ENST00000297261 NINJ1Q92982 152 aa13.9□□□□□ -0.19
SHH-201ENST00000297261 PHF1O43189 567 aaPredicted RBP13.89□□□□□ -0.19
SHH-201ENST00000297261 SCAF4O95104 1147 aaKnown RBP13.89□□□□□ -0.19
SHH-201ENST00000297261 SLC35E2P0CK97 266 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 THBS2P35442 1172 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 PCBP4P57723 403 aaKnown RBP13.89□□□□□ -0.19
SHH-201ENST00000297261 PJVKQ0ZLH3 352 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 SECTM1Q8WVN6 248 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 ARHGDIGQ99819 225 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 USB1Q9BQ65 265 aaKnown RBP13.89□□□□□ -0.19
SHH-201ENST00000297261 OR10A2Q9H208 303 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 MRPL22Q9NWU5 206 aaKnown RBP13.89□□□□□ -0.19
SHH-201ENST00000297261 OR6C6A6NF89 314 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 CHRM2P08172 466 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 MTCP1P56278 107 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 B3GNTL1Q67FW5 361 aaPredicted RBP13.89□□□□□ -0.19
SHH-201ENST00000297261 SLC43A2Q8N370 569 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 BAHD1Q8TBE0 780 aaPredicted RBP13.89□□□□□ -0.19
SHH-201ENST00000297261 RAB39BQ96DA2 213 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 SIGLEC11Q96RL6 698 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 ADGRL4Q9HBW9 690 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 TESK1Q15569 626 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 ETFDHQ16134 617 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 C9orf152Q5JTZ5 239 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 FCRL6Q6DN72 434 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 STACQ99469 402 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 RSRP1Q9BUV0 290 aa13.89□□□□□ -0.19
SHH-201ENST00000297261 PATZ1Q9HBE1 687 aaKnown RBP13.89□□□□□ -0.19
SHH-201ENST00000297261 CD300LBA8K4G0 201 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 SERPINA7P05543 415 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 KLK3P07288 261 aaPredicted RBP13.88□□□□□ -0.19
SHH-201ENST00000297261 ZNF728P0DKX0 622 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 RPL18Q07020 188 aaKnown RBP13.88□□□□□ -0.19
SHH-201ENST00000297261 ADIRFQ15847 76 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 MORN4Q8NDC4 146 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 CPNE4Q96A23 557 aaPredicted RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms