RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 SLIT3O75094 1523 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 MAML2Q8IZL2 1156 aaPredicted RBP12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 C19orf47Q8N9M1 422 aaKnown RBP12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 OR52N1Q8NH53 320 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 SLCO3A1Q9UIG8 710 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 TCRBV3S1A0A5B6 114 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 FABP4P15090 132 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 ZNF280AP59817 542 aaPredicted RBP12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 TMEM268Q5VZI3 342 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 C6orf201Q7Z4U5 140 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 WDR1O75083 606 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 TMEM65Q6PI78 240 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 DHRS13Q6UX07 377 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 ZMAT3Q9HA38 289 aaKnown RBP12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 GPR173Q9NS66 373 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 MMACHCQ9Y4U1 282 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 MEIKINA0A087WXM9 373 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 TMED7-TICAM2A0A0A6YYA0 188 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 HSPB2A8KAH6 182 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 FZD6O60353 706 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 IL5P05113 134 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 CD1BP29016 333 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 HSPB2Q16082 182 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 Q56UQ5 140 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 PIGTQ969N2 578 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 IGSF8Q969P0 613 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 SLCO4A1Q96BD0 722 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 TMED7Q9Y3B3 224 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 C10orf71Q711Q0 1435 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 ACHEP22303 614 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 FAM3AP98173 230 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 OR2G6Q5TZ20 316 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 C11orf54Q9H0W9 315 aaPredicted RBP12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 K7ERU9 68 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 HOXC13P31276 330 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 RHOBP62745 196 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 OR1L4Q8NGR5 311 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 RAB37Q96AX2 223 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 DHRS4Q9BTZ2 278 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 SCN2AQ99250 2005 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 KIR2DL1P43626 348 aaPredicted RBP12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 KIR2DL2P43627 348 aaPredicted RBP12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 CD226Q15762 336 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 SLC38A5Q8WUX1 472 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 SLC22A13Q9Y226 551 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 SCN9AQ15858 1988 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 UNCXA6NJT0 531 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 CSO75390 466 aaKnown RBP12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 PRSS1P07477 247 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 SMAD2Q15796 467 aaKnown RBP12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 PRSS16Q9NQE7 514 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 DIMT1Q9UNQ2 313 aaKnown RBP12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 SIGLEC6O43699 453 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 ALX3O95076 343 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 ALPLP05186 524 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 SHC1P29353 583 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 MS4A10Q96PG2 267 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 FECHP22830 423 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 APOBEC1P41238 236 aaKnown RBP12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 SSX1Q16384 188 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 LRRC10Q5BKY1 277 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 COL5A1-AS1Q5SY13 56 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 ARHGEF28Q8N1W1 1705 aaKnown RBP12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 TPRP12270 2363 aaKnown RBP12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 UBE2L5PA0A1B0GUS4 154 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 BCL3P20749 454 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 IHHQ14623 411 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 CLLU1Q5K131 121 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 APCDD1Q8J025 514 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 OR6C1Q96RD1 312 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 TRGV10A0A0A0MS01 117 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 HIST1H1BP16401 226 aaKnown RBP12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 CD38P28907 300 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 LIPIQ6XZB0 460 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 H1FNTQ75WM6 255 aaPredicted RBP12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 TPSD1Q9BZJ3 242 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 RTL10Q7L3V2 364 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 ZNF429Q86V71 674 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 LINC00346Q8IVM7 164 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 PSORS1C1Q9UIG5 152 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 NFS1Q9Y697 457 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 DOCK9Q9BZ29 2069 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 OR10A7Q8NGE5 316 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 ZDHHC5Q9C0B5 715 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 OR5V1Q9UGF6 321 aa12.75□□□□□ -0.37
CCDC88A-201ENST00000263630 TMEM265A0A087WTH1 108 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 CYR61O00622 381 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 AOAHP28039 575 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 DTD2Q96FN9 168 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 TMEM191AQ9H0A3 160 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 UBE2ZQ9H832 354 aaPredicted RBP12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 LMAN1LQ9HAT1 526 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 CTSFQ9UBX1 484 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 ADRA1AP35348 466 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 IP6K3Q96PC2 410 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 GPX3P22352 226 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 CDKN3Q16667 212 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 OPALINQ96PE5 141 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 SIRT3Q9NTG7 399 aaPredicted RBP12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 UFC1Q9Y3C8 167 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms