RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 PTDSS2Q9BVG9 487 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 COL25A1Q9BXS0 654 aaPredicted RBP10.3□□□□□ -0.76
VPS4A-201ENST00000254950 METTL9Q9H1A3 318 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 ZCCHC4Q9H5U6 513 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 MRPL15Q9P015 296 aaKnown RBP10.3□□□□□ -0.76
VPS4A-201ENST00000254950 CDK2AP1O14519 115 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 OGG1O15527 345 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 LYRM1O43325 122 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 UBL3O95164 117 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 IL7P13232 177 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 RAB1AP62820 205 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 STAC2Q6ZMT1 411 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 TMEM59Q9BXS4 323 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF221Q9UK13 617 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 SPATA2Q9UM82 520 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 NOP16Q9Y3C1 178 aaKnown RBP10.29□□□□□ -0.76
VPS4A-201ENST00000254950 LOC100289279A0A1B0GTE1 492 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 TRIM64A6NGJ6 449 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 NPIPB13A6NJU9 1138 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 NPIPB4C9JG80 1138 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 AIPO00170 330 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 DCTN6O00399 190 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 SERPINA2P20848 420 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 TGM1P22735 817 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 APEX1P27695 318 aaKnown RBP10.29□□□□□ -0.76
VPS4A-201ENST00000254950 CHRFAM7AQ494W8 412 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 CDNFQ49AH0 187 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 DNAAF1Q8NEP3 725 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 PRSS33Q8NF86 280 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 PIGTQ969N2 578 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 DCLRE1CQ96SD1 692 aaKnown RBP10.29□□□□□ -0.76
VPS4A-201ENST00000254950 OBP2BQ9NPH6 170 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 TRAV6A0A075B6T7 132 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 TRGV8A0A0C4DH27 118 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 IFITM5A6NNB3 132 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 UBBP0CG47 229 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 CALCBP10092 127 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 SPINK2P20155 84 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 NBL1P41271 181 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 GMFBP60983 142 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 RIN1Q13671 783 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 SLC25A53Q5H9E4 307 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 TMED4Q7Z7H5 227 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 IL17RDQ8NFM7 739 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 POC1BQ8TC44 478 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 KISS1RQ969F8 398 aaPredicted RBP10.29□□□□□ -0.76
VPS4A-201ENST00000254950 SCNM1Q9BWG6 230 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 C1QTNF6Q9BXI9 259 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 NLKQ9UBE8 527 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 GPR160Q9UJ42 338 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 MED12Q93074 2177 aa10.29□□□□□ -0.76
VPS4A-201ENST00000254950 FAM172BPA6NC97 362 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 FAM25EA8MYX2 175 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 RFPL3SP0C7P2 107 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 NR4A2P43354 598 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 OR10A3P58181 314 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 MRPS34P82930 218 aaKnown RBP10.28□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF239Q16600 458 aaKnown RBP10.28□□□□□ -0.76
VPS4A-201ENST00000254950 SSX6Q7RTT6 188 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 ADGRE4PQ86SQ3 457 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 ORAI1Q96D31 301 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 KCNK17Q96T54 332 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 PLEKHJ1Q9NW61 149 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 COPZ2Q9P299 210 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 LOC100509620A0A075B734 347 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 A0A1B0GTH9 108 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 HSPA12AO43301 675 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 TRAF3IP2O43734 574 aaPredicted RBP10.28□□□□□ -0.76
VPS4A-201ENST00000254950 AGFG1P52594 562 aaKnown RBP10.28□□□□□ -0.76
VPS4A-201ENST00000254950 EIF2S3LQ2VIR3 472 aaKnown RBP10.28□□□□□ -0.76
VPS4A-201ENST00000254950 PCGF3Q3KNV8 242 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 ABCA11PQ4W5N1 156 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 C3P1Q6ZMU1 363 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 BTN2A1Q7KYR7 527 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 ANGPTL5Q86XS5 388 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 ACBD4Q8NC06 268 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 SLIRPQ9GZT3 109 aaKnown RBP10.28□□□□□ -0.76
VPS4A-201ENST00000254950 FLVCR1Q9Y5Y0 555 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 TRAPPC2LH3BP13 241 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 DVL2O14641 736 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 ZIC3O60481 467 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 HACD4Q5VWC8 232 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 FAM122BQ7Z309 247 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 ARMC10Q8N2F6 343 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 OR4M1Q8NGD0 313 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF519Q8TB69 540 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 PAIP2BQ9ULR5 123 aaKnown RBP10.28□□□□□ -0.76
VPS4A-201ENST00000254950 OTOGLQ3ZCN5 2332 aa10.28□□□□□ -0.76
VPS4A-201ENST00000254950 TIMM8AO60220 97 aaPredicted RBP10.27□□□□□ -0.76
VPS4A-201ENST00000254950 TSC22D2O75157 780 aa10.27□□□□□ -0.76
VPS4A-201ENST00000254950 LALBAP00709 142 aa10.27□□□□□ -0.76
VPS4A-201ENST00000254950 DBHP09172 617 aa10.27□□□□□ -0.76
VPS4A-201ENST00000254950 HERV-K104P61576 105 aa10.27□□□□□ -0.76
VPS4A-201ENST00000254950 GSG1Q2KHT4 349 aa10.27□□□□□ -0.76
VPS4A-201ENST00000254950 ZFP69Q49AA0 526 aa10.27□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF774Q6NX45 483 aa10.27□□□□□ -0.76
VPS4A-201ENST00000254950 CSNK2A3Q8NEV1 391 aa10.27□□□□□ -0.76
VPS4A-201ENST00000254950 OR56B1Q8NGI3 324 aa10.27□□□□□ -0.76
VPS4A-201ENST00000254950 REEP6Q96HR9 211 aa10.27□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF703Q9H7S9 590 aaPredicted RBP10.27□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms