RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 FUCA1P04066 466 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 DBHP09172 617 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 TRAPPC2P0DI81 140 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 TRAPPC2BP0DI82 140 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 RPL23AP62750 156 aaKnown RBP12.23□□□□□ -0.45
LDLR-201ENST00000252444 PEAR1Q5VY43 1037 aaPredicted RBP12.23□□□□□ -0.45
LDLR-201ENST00000252444 TMEM81Q6P7N7 255 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 GLIPR1L1Q6UWM5 242 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 KCTD9Q7L273 389 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 C17orf78Q8N4C9 275 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 OR4K15Q8NH41 348 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 FNDC9Q8TBE3 224 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 WNT2BQ93097 391 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 TCEAL3Q969E4 200 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 SIGLEC11Q96RL6 698 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 ADAM19Q9H013 955 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 TAS2R16Q9NYV7 291 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 TRAPPC2LQ9UL33 140 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 SERPINE3A8MV23 424 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 AKR1C2P52895 323 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 DLX5P56178 289 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 YBX1P67809 324 aaKnown RBP12.23□□□□□ -0.45
LDLR-201ENST00000252444 OLIG3Q7RTU3 272 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 OR4Q3Q8NH05 313 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 LGALS14Q8TCE9 139 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 LAMP3Q9UQV4 416 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 HPGDSO60760 199 aa12.22□□□□□ -0.45
LDLR-201ENST00000252444 SEC61A1P61619 476 aaKnown RBP12.22□□□□□ -0.45
LDLR-201ENST00000252444 ZFP36L1Q07352 338 aaKnown RBP12.22□□□□□ -0.45
LDLR-201ENST00000252444 STOML3Q8TAV4 291 aa12.22□□□□□ -0.45
LDLR-201ENST00000252444 MGAT4CQ9UBM8 478 aa12.22□□□□□ -0.45
LDLR-201ENST00000252444 CCBE1Q6UXH8 406 aaPredicted RBP12.22□□□□□ -0.45
LDLR-201ENST00000252444 BHLHA15Q7RTS1 189 aaPredicted RBP12.22□□□□□ -0.45
LDLR-201ENST00000252444 TMEM179BQ7Z7N9 219 aa12.22□□□□□ -0.45
LDLR-201ENST00000252444 MCHR2Q969V1 340 aa12.22□□□□□ -0.45
LDLR-201ENST00000252444 PRR14Q9BWN1 585 aa12.22□□□□□ -0.45
LDLR-201ENST00000252444 MYOZ1Q9NP98 299 aaPredicted RBP12.22□□□□□ -0.45
LDLR-201ENST00000252444 NME2P1O60361 137 aa12.22□□□□□ -0.45
LDLR-201ENST00000252444 SEMG1P04279 462 aa12.22□□□□□ -0.45
LDLR-201ENST00000252444 NME2P22392 152 aa12.22□□□□□ -0.45
LDLR-201ENST00000252444 POLR2IP36954 125 aaKnown RBP12.22□□□□□ -0.45
LDLR-201ENST00000252444 ADGRG3Q86Y34 549 aa12.22□□□□□ -0.45
LDLR-201ENST00000252444 MFRPQ9BY79 579 aa12.22□□□□□ -0.45
LDLR-201ENST00000252444 M0R1B8 84 aa12.22□□□□□ -0.45
LDLR-201ENST00000252444 DHRS3O75911 302 aa12.22□□□□□ -0.45
LDLR-201ENST00000252444 OPRL1P41146 370 aa12.22□□□□□ -0.45
LDLR-201ENST00000252444 FXYD6P3P58550 94 aa12.22□□□□□ -0.45
LDLR-201ENST00000252444 CAMK2BQ13554 666 aa12.22□□□□□ -0.45
LDLR-201ENST00000252444 PAN3Q58A45 887 aaKnown RBP12.22□□□□□ -0.45
LDLR-201ENST00000252444 TTTY12Q9BZ98 90 aa12.22□□□□□ -0.45
LDLR-201ENST00000252444 PLA2G3Q9NZ20 509 aa12.22□□□□□ -0.45
LDLR-201ENST00000252444 C13orf42A0A1B0GVH6 325 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 C5orf49A4QMS7 147 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 J3QRK9 145 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 ST8SIA5O15466 376 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 BLVRBP30043 206 aaPredicted RBP12.21□□□□□ -0.45
LDLR-201ENST00000252444 GNG3P63215 75 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 GDPD3Q7L5L3 318 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 POM121Q96HA1 1249 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 OR5M11Q96RB7 305 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 SELENOIQ9C0D9 397 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 LPAR3Q9UBY5 353 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 MAB21L2Q9Y586 359 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 TMEM8BA6NDV4 472 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 F5H5P2 479 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 BHLHE40O14503 412 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 HTR2AP28223 471 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 RHOUQ7L0Q8 258 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 CISD2Q8N5K1 135 aaKnown RBP12.21□□□□□ -0.45
LDLR-201ENST00000252444 ROBO4Q8WZ75 1007 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 EMC6Q9BV81 110 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 PRDM6Q9NQX0 595 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 MED29Q9NX70 200 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 SH3BGRL2Q9UJC5 107 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 TMEM210A6NLX4 147 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 CD300LBA8K4G0 201 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 DXOO77932 396 aaKnown RBP12.21□□□□□ -0.45
LDLR-201ENST00000252444 IGKV3-11P04433 115 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 COX5BP10606 129 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 MRPS34P82930 218 aaKnown RBP12.21□□□□□ -0.45
LDLR-201ENST00000252444 INSM1Q01101 510 aaPredicted RBP12.21□□□□□ -0.45
LDLR-201ENST00000252444 PMPCAQ10713 525 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 SPCS2Q15005 226 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 CMTM4Q8IZR5 234 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 OR13G1Q8NGZ3 307 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 CASTOR1Q8WTX7 329 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 TMIGD2Q96BF3 282 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 GPR84Q9NQS5 396 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 FSCN3Q9NQT6 498 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 RHBDD3Q9Y3P4 386 aa12.21□□□□□ -0.45
LDLR-201ENST00000252444 SMIM18P0DKX4 95 aa12.21□□□□□ -0.46
LDLR-201ENST00000252444 IL7P13232 177 aa12.21□□□□□ -0.46
LDLR-201ENST00000252444 ALDH3B1P43353 468 aa12.21□□□□□ -0.46
LDLR-201ENST00000252444 SOX8P57073 446 aa12.21□□□□□ -0.46
LDLR-201ENST00000252444 AADACL4Q5VUY2 407 aa12.21□□□□□ -0.46
LDLR-201ENST00000252444 PARP16Q8N5Y8 322 aa12.21□□□□□ -0.46
LDLR-201ENST00000252444 SLC52A3Q9NQ40 469 aa12.21□□□□□ -0.46
LDLR-201ENST00000252444 KIAA1671Q9BY89 1806 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 OR7C1O76099 320 aaPredicted RBP12.2□□□□□ -0.46
LDLR-201ENST00000252444 SCGB1D2O95969 90 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms