RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 FKBP11Q9NYL4 201 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 MRPS28Q9Y2Q9 187 aaKnown RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 EFNB1P98172 346 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 SPANXN3Q5MJ09 141 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 RGMBQ6NW40 437 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 MDGA2Q7Z553 956 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 NEIL1Q96FI4 390 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 NIPSNAP1Q9BPW8 284 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 EPHX3Q9H6B9 360 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 MAGIXQ9H6Y5 334 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 GNG12Q9UBI6 72 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 POMT2Q9UKY4 750 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 GBF1Q92538 1859 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 FRMPD3Q5JV73 1810 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CRYAAP02489 173 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 REG1AP05451 166 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CT45A6P0DMU7 189 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CT45A5P0DMU8 189 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CT45A7P0DMV0 189 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 PRB4P10163 310 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 HTR1EP28566 365 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CT45A1Q5HYN5 189 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 ZFAND4Q86XD8 727 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CT45A3Q8NHU0 189 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CLEC4CQ8WTT0 213 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 C11orf40Q8WZ69 217 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 TAPBPLQ9BX59 468 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 FAM124BQ9H5Z6 455 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM184CQ9NVA4 438 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 MED23Q9ULK4 1368 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CASZ1Q86V15 1759 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 YJEFN3A6XGL0 299 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 SOD3P08294 240 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 ACKR3P25106 362 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 GGT2P36268 569 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 PPOXP50336 477 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 POLR2HP52434 150 aaKnown RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CLDN18P56856 261 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 GAGE5Q13069 117 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 GAGE6Q13070 117 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 PQLC3Q8N755 202 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 DUSP19Q8WTR2 217 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 ST6GAL2Q96JF0 529 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 WDR92Q96MX6 357 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 FCRL5Q96RD9 977 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 TNRQ92752 1358 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 F8WDY8 70 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 DBHP09172 617 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 ADRA1AP35348 466 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 OR8B8Q15620 311 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 ZDHHC23Q8IYP9 409 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 C3orf56Q8N813 242 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 FADS6Q8N9I5 356 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 SUMF2Q8NBJ7 301 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 OR4M1Q8NGD0 313 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 SCGB3A2Q96PL1 93 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 PRRT1Q99946 306 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 NANOGQ9H9S0 305 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 AMBNQ9NP70 447 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 HRASLS2Q9NWW9 162 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 FTH1P19P0C7X4 201 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 NME2P22392 152 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 DCTP40126 519 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 SHC2P98077 582 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 CXCL9Q07325 125 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 PIGFQ07326 219 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 SHBQ15464 509 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 SPIN4Q56A73 249 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 PLAC9Q5JTB6 97 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF571Q7Z3V5 609 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 HSD17B13Q7Z5P4 300 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 SPICQ8N5J4 248 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 PNLDC1Q8NA58 520 aaKnown RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 EDARADDQ8WWZ3 215 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 TCF19Q9Y242 345 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 CFAP20Q9Y6A4 193 aaKnown RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 CENPVL1A0A0U1RR11 272 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 CENPVL3A0A0U1RRI6 287 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 PRAF2O60831 178 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 DNASE1L1P49184 302 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF774Q6NX45 483 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 LCTLQ6UWM7 567 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 LCN15Q6UWW0 184 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 CFHR4Q92496 578 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 MARVELD3Q96A59 401 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM18Q96B42 140 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 FAM49AQ9H0Q0 323 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 CISD1Q9NZ45 108 aaKnown RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 SEMA5BQ9P283 1151 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 EMC9Q9Y3B6 208 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 JCADQ9P266 1359 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 CAMSAP2Q08AD1 1489 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 RGS12O14924 1447 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM229AB2RXF0 380 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 FOXO3O43524 673 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 DLX5P56178 289 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 HERPUD1Q15011 391 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 HIST2H2ACQ16777 129 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 UNQ6494/PRO21346Q6UXR6 183 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms