RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 CLINT1Q14677 625 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 PDK3Q15120 406 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 QPRTQ15274 297 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 OR7A5Q15622 319 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CHRNA6Q15825 494 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 SNRNP35Q16560 246 aaKnown RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 CCL15Q16663 113 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 PGGHGQ32M88 737 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 KRTAP25-1Q3LHN0 102 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 LINC00303Q3SY05 128 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 PTPN20Q4JDL3 420 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 DEFB134Q4QY38 66 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CT45A1Q5HYN5 189 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 C6orf226Q5I0X4 101 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CTSL3PQ5NE16 218 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 THEM4Q5T1C6 240 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 UBE2UQ5VVX9 321 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 GPR107Q5VW38 600 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 ANKRD22Q5VYY1 191 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 METTL21CQ5VZV1 264 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 FAM104BQ5XKR9 115 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 AP1ARQ63HQ0 302 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 ZNF470Q6ECI4 717 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 ANKRD26P1Q6NSI1 321 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 H3F3CQ6NXT2 135 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 MED27Q6P2C8 311 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CASP12Q6UXS9 341 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CERS6Q6ZMG9 384 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 LRRC74BQ6ZQY2 392 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 Q6ZS52 159 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 NIPA1Q7RTP0 329 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CCDC50Q8IVM0 306 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 EID2Q8N6I1 236 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 COX18Q8N8Q8 333 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 LY6G5BQ8NDX9 201 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 TMEM104Q8NE00 496 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 B3GNT7Q8NFL0 401 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 OR1L1Q8NH94 360 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CT45A3Q8NHU0 189 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 RHEBL1Q8TAI7 183 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 UBE2Q2Q8WVN8 375 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 MAIP1Q8WWC4 291 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 THRSPQ92748 146 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 NT5C3BQ969T7 300 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 S100PBPQ96BU1 408 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 DCPSQ96C86 337 aaKnown RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 TUBGCP3Q96CW5 907 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 PKNOX2Q96KN3 472 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 SERPINB12Q96P63 405 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 RBM14Q96PK6 669 aaKnown RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 ZNF317Q96PQ6 595 aaPredicted RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 STACQ99469 402 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 RBBP8Q99708 897 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 HSD17B10Q99714 261 aaKnown RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 TBL1YQ9BQ87 522 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 ERP44Q9BS26 406 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 ZNF649Q9BS31 505 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 ROPN1BQ9BZX4 212 aaPredicted RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 RWDD1Q9H446 243 aaPredicted RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 TRIM45Q9H8W5 580 aaPredicted RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 EDA2RQ9HAV5 297 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 SGK2Q9HBY8 427 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 FGF20Q9NP95 211 aaPredicted RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 EXOSC4Q9NPD3 245 aaKnown RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 KCNJ16Q9NPI9 418 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 POLE4Q9NR33 117 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 ETNK2Q9NVF9 386 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 SDAD1Q9NVU7 687 aaKnown RBP eCLIP0.08□□□□□ -2.4
VPS35-212ENST00000640313 NLE1Q9NVX2 485 aaPredicted RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 DCAF16Q9NXF7 216 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 C21orf62Q9NYP8 219 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 TMOD2Q9NZR1 351 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 ZNF492Q9P255 531 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 SLC17A7Q9P2U7 560 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CTSFQ9UBX1 484 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 MTFP1Q9UDX5 166 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 RAB23Q9ULC3 237 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 ING4Q9UNL4 249 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 ATP6V0A2Q9Y487 856 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CSDC2Q9Y534 153 aaKnown RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 TRIP11Q15643 1979 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 ZBED9Q6R2W3 1325 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 ADGRA3Q8IWK6 1321 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 PCDH11XQ9BZA7 1347 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 MAPK8IP3Q9UPT6 1336 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 COL11A1P12107 1806 aaPredicted RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 FRMPD3Q5JV73 1810 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 PRR14LQ5THK1 2151 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 MALRD1Q5VYJ5 2156 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 SMIM26A0A096LP01 95 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 IGHV3OR16-9A0A0B4J2B5 98 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 IGHV1-69DA0A0B4J2H0 117 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 IGKV1-6A0A0C4DH72 117 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 ARHGEF35A5YM69 484 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 A6NDN8 102 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 GABRR3A8MPY1 467 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 CEACAM18A8MTB9 384 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 PDZK1P1A8MUH7 402 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 GPR89AB7ZAQ6 455 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 NDUFC2-KCTD14E9PQ53 114 aa0.07□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms