RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 RAB1CQ92928 201 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 CERS2Q96G23 380 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 ZBED3Q96IU2 234 aaPredicted RBP1.64□□□□□ -2.15
CD44-239ENST00000639002 CYTH2Q99418 400 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 TRIM62Q9BVG3 475 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 TEKT3Q9BXF9 490 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 ANKRD60Q9BZ19 345 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 NDEL1Q9GZM8 345 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 HDHD2Q9H0R4 259 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 GAL3ST2Q9H3Q3 398 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 ELOVL6Q9H5J4 265 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 SPACA1Q9HBV2 294 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 MRPS30Q9NP92 439 aaKnown RBP1.64□□□□□ -2.15
CD44-239ENST00000639002 ZNF586Q9NXT0 402 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 CALYQ9NYX4 217 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 MTCH1Q9NZJ7 389 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 PISDQ9UG56 409 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 NUP50Q9UKX7 468 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 VANGL2Q9ULK5 521 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 TNS2Q63HR2 1409 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 SETXQ7Z333 2677 aaKnown RBP1.63□□□□□ -2.15
CD44-239ENST00000639002 MSH6P52701 1360 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 WDR62O43379 1518 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 IGLV1-50A0A075B6I6 118 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 IGHV3-66A0A0C4DH42 116 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 A0A1B0GUH1 482 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 A0A1W2PP18 115 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 CLOCKO15516 846 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 SOX15O60248 233 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 CLPXO76031 633 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 SMC2O95347 1197 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 SNAI1O95863 264 aaPredicted RBP1.63□□□□□ -2.15
CD44-239ENST00000639002 CST1P01037 141 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 C2P06681 752 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 MYL2P10916 166 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 ATP1B2P14415 290 aaPredicted RBP1.63□□□□□ -2.15
CD44-239ENST00000639002 ETS2P15036 469 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 STOMP27105 288 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 AK4P27144 223 aaPredicted RBP1.63□□□□□ -2.15
CD44-239ENST00000639002 HTR2BP41595 481 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 KIR3DL2P43630 455 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 RPS5P46782 204 aaKnown RBP1.63□□□□□ -2.15
CD44-239ENST00000639002 PLP1P60201 277 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 RAB10P61026 200 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 SYCNQ0VAF6 134 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 FZD2Q14332 565 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 GPR176Q14439 515 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 ALKBH6Q3KRA9 238 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 PTPN20Q4JDL3 420 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 C9orf135Q5VTT2 229 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 SLC25A25Q6KCM7 469 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 ENPP6Q6UWR7 440 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 SCD5Q86SK9 330 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 TRIM69Q86WT6 500 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 CD302Q8IX05 232 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 ARHGAP18Q8N392 663 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 GTPBP8Q8N3Z3 284 aaPredicted RBP1.63□□□□□ -2.15
CD44-239ENST00000639002 LINC00469Q8N7U9 141 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 DNAAF3Q8N9W5 541 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 FBXL13Q8NEE6 735 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 PROKR2Q8NFJ6 384 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 ANGPTL6Q8NI99 470 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 RHEBL1Q8TAI7 183 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 GPR151Q8TDV0 419 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 CCDC124Q96CT7 223 aaKnown RBP1.63□□□□□ -2.15
CD44-239ENST00000639002 JSRP1Q96MG2 331 aaPredicted RBP1.63□□□□□ -2.15
CD44-239ENST00000639002 GLT1D1Q96MS3 346 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 ZNF396Q96N95 335 aaPredicted RBP1.63□□□□□ -2.15
CD44-239ENST00000639002 CNN2Q99439 309 aaKnown RBP1.63□□□□□ -2.15
CD44-239ENST00000639002 FMO2Q99518 471 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 SORT1Q99523 831 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 SLC29A1Q99808 456 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 KCTD14Q9BQ13 255 aaPredicted RBP1.63□□□□□ -2.15
CD44-239ENST00000639002 TMEM175Q9BSA9 504 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 TM6SF2Q9BZW4 377 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 NIPAL2Q9H841 368 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 ANKRA2Q9H9E1 313 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 NMRAL1Q9HBL8 299 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 NT5MQ9NPB1 228 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 ADAP2Q9NPF8 381 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 ZC4H2Q9NQZ6 224 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 SAMSN1Q9NSI8 373 aaKnown RBP1.63□□□□□ -2.15
CD44-239ENST00000639002 NKIRAS1Q9NYS0 192 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 AHSPQ9NZD4 102 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 SLC7A8Q9UHI5 535 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 STARD10Q9Y365 291 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 PEX16Q9Y5Y5 336 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 ABCA2Q9BZC7 2435 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 PTPN13Q12923 2485 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 NFASCO94856 1347 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 PCNX2A6NKB5 2137 aa1.63□□□□□ -2.15
CD44-239ENST00000639002 USP47Q96K76 1375 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 GSTTP1A0A1W2PQM5 241 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 CIB4A0PJX0 185 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 TMEM120BA0PK00 339 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 LRRIQ3A6PVS8 624 aaPredicted RBP1.62□□□□□ -2.15
CD44-239ENST00000639002 GABRR3A8MPY1 467 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 CENPXA8MT69 81 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 PPP1R2P9O14990 202 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 PSTPIP1O43586 416 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms