RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 SERPINA1P01009 418 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 SBK2P0C263 348 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 CTLA4P16410 223 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 SLC7A2P52569 658 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 KCNMB1Q16558 191 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 TUSC1Q2TAM9 212 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 TBPL2Q6SJ96 375 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 OR2Z1Q8NG97 314 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 SLC7A13Q8TCU3 470 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 DVL3Q92997 716 aaPredicted RBP15.53■□□□□ 0.08
CLN3-241ENST00000635861 RASD2Q96D21 266 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 CMBLQ96DG6 245 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 GPA33Q99795 319 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 DCLRE1BQ9H816 532 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 DDX28Q9NUL7 540 aaKnown RBP15.53■□□□□ 0.08
CLN3-241ENST00000635861 PPP1R3CQ9UQK1 317 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 SIGLEC7Q9Y286 467 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 FAM32AQ9Y421 112 aaKnown RBP15.53■□□□□ 0.08
CLN3-241ENST00000635861 F5H0A9 414 aaPredicted RBP15.52■□□□□ 0.08
CLN3-241ENST00000635861 H1F0P07305 194 aaKnown RBP15.52■□□□□ 0.08
CLN3-241ENST00000635861 ZNF26P17031 533 aaPredicted RBP15.52■□□□□ 0.08
CLN3-241ENST00000635861 CALB2P22676 271 aa15.52■□□□□ 0.08
CLN3-241ENST00000635861 MDH2P40926 338 aaKnown RBP15.52■□□□□ 0.08
CLN3-241ENST00000635861 SLC6A9P48067 706 aa15.52■□□□□ 0.08
CLN3-241ENST00000635861 GSK3BP49841 420 aa15.52■□□□□ 0.08
CLN3-241ENST00000635861 SPRNQ5BIV9 151 aa15.52■□□□□ 0.08
CLN3-241ENST00000635861 ARMCX4Q5H9R4 360 aa15.52■□□□□ 0.08
CLN3-241ENST00000635861 FBXW12Q6X9E4 464 aa15.52■□□□□ 0.08
CLN3-241ENST00000635861 RBMS3Q6XE24 437 aaKnown RBP15.52■□□□□ 0.08
CLN3-241ENST00000635861 Q6ZR03 302 aa15.52■□□□□ 0.08
CLN3-241ENST00000635861 ZDHHC22Q8N966 263 aa15.52■□□□□ 0.08
CLN3-241ENST00000635861 DEFB108BQ8NET1 73 aa15.52■□□□□ 0.08
CLN3-241ENST00000635861 OR1F12Q8NHA8 337 aa15.52■□□□□ 0.08
CLN3-241ENST00000635861 FAM162AQ96A26 154 aa15.52■□□□□ 0.08
CLN3-241ENST00000635861 SIGLEC11Q96RL6 698 aa15.52■□□□□ 0.08
CLN3-241ENST00000635861 MRI1Q9BV20 369 aa15.52■□□□□ 0.08
CLN3-241ENST00000635861 SYT4Q9H2B2 425 aa15.52■□□□□ 0.08
CLN3-241ENST00000635861 ASH2LQ9UBL3 628 aa15.52■□□□□ 0.08
CLN3-241ENST00000635861 LRCH1Q9Y2L9 728 aa15.52■□□□□ 0.08
CLN3-241ENST00000635861 STARD10Q9Y365 291 aa15.52■□□□□ 0.08
CLN3-241ENST00000635861 SLC16A7O60669 478 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 FSTL3O95633 263 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 TXNDC12O95881 172 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 ZNF12P17014 697 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 RHCEP18577 417 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 ZFP36P26651 326 aaKnown RBP15.51■□□□□ 0.07
CLN3-241ENST00000635861 CRABP1P29762 137 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 RPS6KA3P51812 740 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 UBA52P62987 128 aaKnown RBP15.51■□□□□ 0.07
CLN3-241ENST00000635861 DNM1P34Q6PK57 102 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 DPY19L2P2Q6ZN68 376 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 GJC3Q8NFK1 279 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 ITLN1Q8WWA0 313 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 FAM46AQ96IP4 442 aaKnown RBP15.51■□□□□ 0.07
CLN3-241ENST00000635861 OR2V2Q96R30 315 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 KCTD14Q9BQ13 255 aaPredicted RBP15.51■□□□□ 0.07
CLN3-241ENST00000635861 HDHD2Q9H0R4 259 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 POFUT1Q9H488 388 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 RNPEPL1Q9HAU8 725 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 ABCD2Q9UBJ2 740 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 EGFL7Q9UHF1 273 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 NUP50Q9UKX7 468 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 INSIG2Q9Y5U4 225 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 AUP1Q9Y679 476 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 SPRY1O43609 319 aaPredicted RBP15.51■□□□□ 0.07
CLN3-241ENST00000635861 PPIAL4GP0DN37 164 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 ZNF154Q13106 437 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 CCDC92Q53HC0 331 aaPredicted RBP15.51■□□□□ 0.07
CLN3-241ENST00000635861 ESCO2Q56NI9 601 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 APOBEC3DQ96AK3 386 aaPredicted RBP15.51■□□□□ 0.07
CLN3-241ENST00000635861 COQ7Q99807 217 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 ESM1Q9NQ30 184 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 DCAF16Q9NXF7 216 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 GMPR2Q9P2T1 348 aaKnown RBP15.51■□□□□ 0.07
CLN3-241ENST00000635861 IL20RAQ9UHF4 553 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 SAMD4AQ9UPU9 718 aaKnown RBP15.51■□□□□ 0.07
CLN3-241ENST00000635861 AURKCQ9UQB9 309 aa15.51■□□□□ 0.07
CLN3-241ENST00000635861 COA3Q9Y2R0 106 aaPredicted RBP15.51■□□□□ 0.07
CLN3-241ENST00000635861 TMEM178BH3BS89 294 aa15.5■□□□□ 0.07
CLN3-241ENST00000635861 OMPP47874 163 aa15.5■□□□□ 0.07
CLN3-241ENST00000635861 SRP9P49458 86 aaKnown RBP15.5■□□□□ 0.07
CLN3-241ENST00000635861 HIST1H3AP68431 136 aa15.5■□□□□ 0.07
CLN3-241ENST00000635861 FOXL1Q12952 345 aa15.5■□□□□ 0.07
CLN3-241ENST00000635861 ZMYND11Q15326 602 aa15.5■□□□□ 0.07
CLN3-241ENST00000635861 ZNF181Q2M3W8 571 aa15.5■□□□□ 0.07
CLN3-241ENST00000635861 HIST2H3PS2Q5TEC6 136 aa15.5■□□□□ 0.07
CLN3-241ENST00000635861 HIST2H3AQ71DI3 136 aa15.5■□□□□ 0.07
CLN3-241ENST00000635861 DOK3Q7L591 496 aa15.5■□□□□ 0.07
CLN3-241ENST00000635861 TSEN54Q7Z6J9 526 aaKnown RBP15.5■□□□□ 0.07
CLN3-241ENST00000635861 OR8G5Q8NG78 346 aa15.5■□□□□ 0.07
CLN3-241ENST00000635861 OR13G1Q8NGZ3 307 aa15.5■□□□□ 0.07
CLN3-241ENST00000635861 GCM1Q9NP62 436 aa15.5■□□□□ 0.07
CLN3-241ENST00000635861 OR5V1Q9UGF6 321 aa15.5■□□□□ 0.07
CLN3-241ENST00000635861 IMPA2O14732 288 aa15.49■□□□□ 0.07
CLN3-241ENST00000635861 NUDT2P50583 147 aa15.49■□□□□ 0.07
CLN3-241ENST00000635861 AWAT1Q58HT5 328 aa15.49■□□□□ 0.07
CLN3-241ENST00000635861 FGD3Q5JSP0 725 aa15.49■□□□□ 0.07
CLN3-241ENST00000635861 SLC7A6OSQ96CW6 309 aaPredicted RBP15.49■□□□□ 0.07
CLN3-241ENST00000635861 DHRS1Q96LJ7 313 aa15.49■□□□□ 0.07
CLN3-241ENST00000635861 ZNF582Q96NG8 517 aaPredicted RBP15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms