RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 TGFBR2P37173 567 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 MPV17P39210 176 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 IDH2P48735 452 aaKnown RBP0.8□□□□□ -2.28
SCN1A-208ENST00000625916 CSNK1EP49674 416 aaKnown RBP0.8□□□□□ -2.28
SCN1A-208ENST00000625916 GZMMP51124 257 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 SYNJ2BPP57105 145 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 SEC61GP60059 68 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 TNFRSF9Q07011 255 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 TGM3Q08188 693 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 DMC1Q14565 340 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 MAD2L1BPQ15013 274 aaPredicted RBP0.8□□□□□ -2.28
SCN1A-208ENST00000625916 OR7A5Q15622 319 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 DEFB134Q4QY38 66 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 C6orf226Q5I0X4 101 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 STUMQ69YW2 141 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 H3F3CQ6NXT2 135 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 NKAIN4Q8IVV8 208 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 MS4A15Q8N5U1 240 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 COX18Q8N8Q8 333 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 SDR9C7Q8NEX9 313 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 OR5T1Q8NG75 326 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 PLPPR1Q8TBJ4 325 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 SLC7A13Q8TCU3 470 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 HGDQ93099 445 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 DCPSQ96C86 337 aaKnown RBP0.8□□□□□ -2.28
SCN1A-208ENST00000625916 STACQ99469 402 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 MICU1Q9BPX6 476 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 CHCHD7Q9BUK0 85 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 VCX2Q9H322 139 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 LSM7Q9UK45 103 aaKnown RBP0.8□□□□□ -2.28
SCN1A-208ENST00000625916 NUP50Q9UKX7 468 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 PALLDQ8WX93 1383 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 IGHV3-72A0A0B4J1Y9 119 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 OR52A4PA6NMU1 304 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 LRRIQ3A6PVS8 624 aaPredicted RBP0.79□□□□□ -2.28
SCN1A-208ENST00000625916 NDUFC2-KCTD14E9PQ53 114 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 H0YCG3 227 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 PLIN3O60664 434 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 GLSO94925 669 aaPredicted RBP0.79□□□□□ -2.28
SCN1A-208ENST00000625916 GUCA1CO95843 209 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 LHBP01229 141 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 EIF4EP06730 217 aaKnown RBP0.79□□□□□ -2.28
SCN1A-208ENST00000625916 GGT1P19440 569 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 CHMLP26374 656 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 GPX4P36969 197 aaPredicted RBP0.79□□□□□ -2.28
SCN1A-208ENST00000625916 GALR1P47211 349 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 AIF1P55008 147 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 GFERP55789 205 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 RPL23P62829 140 aaKnown RBP0.79□□□□□ -2.28
SCN1A-208ENST00000625916 ADARB1P78563 741 aaKnown RBP0.79□□□□□ -2.28
SCN1A-208ENST00000625916 FAM53BQ14153 422 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 RBMY1FQ15415 496 aaKnown RBP0.79□□□□□ -2.28
SCN1A-208ENST00000625916 MED27Q6P2C8 311 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 PRSS54Q6PEW0 395 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 NT5DC3Q86UY8 548 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 ZSCAN30Q86W11 494 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 CDR2LQ86X02 465 aaPredicted RBP0.79□□□□□ -2.28
SCN1A-208ENST00000625916 CSGALNACT2Q8N6G5 542 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 Q8NDZ9 215 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 OR11H7Q8NGC8 314 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 OR10AD1Q8NGE0 317 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 OR2A1Q8NGT9 310 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 CCDC126Q96EE4 140 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 SLC41A3Q96GZ6 507 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 ZFP3Q96NJ6 502 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 ATP5SQ99766 215 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 SEC22CQ9BRL7 303 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 CSNK1G1Q9HCP0 422 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 TMEM9BQ9NQ34 198 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 PARP11Q9NR21 331 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 TAS2R1Q9NYW7 299 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 COL11A1P12107 1806 aaPredicted RBP0.79□□□□□ -2.28
SCN1A-208ENST00000625916 SCN4AP35499 1836 aa0.79□□□□□ -2.28
SCN1A-208ENST00000625916 C4orf51C9J302 202 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 KRBOX1C9JBD0 128 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 PRAMEF26H0Y7S4 382 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 NVLO15381 856 aaKnown RBP0.78□□□□□ -2.28
SCN1A-208ENST00000625916 KLHL41O60662 606 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 CLPXO76031 633 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 SERPINA5P05154 406 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 MCF2P10911 925 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 HRES1P13985 223 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 DESP17661 470 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 TCP1P17987 556 aaKnown RBP0.78□□□□□ -2.28
SCN1A-208ENST00000625916 FOXN2P32314 431 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 RBM34P42696 430 aaKnown RBP0.78□□□□□ -2.28
SCN1A-208ENST00000625916 IFNAR2P48551 515 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 TPMTP51580 245 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 CCNHP51946 323 aaPredicted RBP0.78□□□□□ -2.28
SCN1A-208ENST00000625916 KRTAP12-1P59990 96 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 PPIDQ08752 370 aaKnown RBP0.78□□□□□ -2.28
SCN1A-208ENST00000625916 BIKQ13323 160 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 LRRC23Q53EV4 343 aaPredicted RBP0.78□□□□□ -2.28
SCN1A-208ENST00000625916 KLHL12Q53G59 568 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 CCDC92Q53HC0 331 aaPredicted RBP0.78□□□□□ -2.28
SCN1A-208ENST00000625916 GPR107Q5VW38 600 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 KDELC1Q6UW63 502 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 MRPL55Q7Z7F7 128 aaKnown RBP0.78□□□□□ -2.28
SCN1A-208ENST00000625916 TMEM150AQ86TG1 271 aa0.78□□□□□ -2.28
SCN1A-208ENST00000625916 GTPBP8Q8N3Z3 284 aaPredicted RBP0.78□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms