RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 STOMP27105 288 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 LAP3P28838 519 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 DUSP3P51452 185 aaPredicted RBP9.44□□□□□ -0.9
CUX1-221ENST00000622516 SSR4P51571 173 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 IGSF11Q5DX21 431 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 BAIAP2L2Q6UXY1 529 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 TIPARPQ7Z3E1 657 aaKnown RBP9.44□□□□□ -0.9
CUX1-221ENST00000622516 ZC3H10Q96K80 434 aaKnown RBP9.44□□□□□ -0.9
CUX1-221ENST00000622516 NXT1Q9UKK6 140 aaKnown RBP9.44□□□□□ -0.9
CUX1-221ENST00000622516 DCHS1Q96JQ0 3298 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 ETV2O00321 342 aaPredicted RBP9.43□□□□□ -0.9
CUX1-221ENST00000622516 YKT6O15498 198 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 XRCC3O43542 346 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 WDPCPO95876 746 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 IGHG1P01857 330 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 PSMB1P20618 241 aaKnown RBP9.43□□□□□ -0.9
CUX1-221ENST00000622516 IL32P24001 234 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 HTR2CP28335 458 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 FOLR3P41439 243 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 RAD52P43351 418 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 HAAOP46952 286 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 DYRK1AQ13627 763 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 MOGAT2Q3SYC2 334 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 SLC25A53Q5H9E4 307 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 PEAR1Q5VY43 1037 aaPredicted RBP9.43□□□□□ -0.9
CUX1-221ENST00000622516 LAMTOR1Q6IAA8 161 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 BTN2A1Q7KYR7 527 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 FADS6Q8N9I5 356 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 RNF133Q8WVZ7 376 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 CYYR1Q96J86 154 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 CMTM3Q96MX0 182 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 ZNF385AQ96PM9 386 aaKnown RBP9.43□□□□□ -0.9
CUX1-221ENST00000622516 HPF1Q9NWY4 346 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 PISDQ9UG56 409 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 GDF2Q9UK05 429 aaPredicted RBP9.43□□□□□ -0.9
CUX1-221ENST00000622516 PCDHGA5Q9Y5G8 931 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 MED13Q9UHV7 2174 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 DOCK7Q96N67 2140 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 IGLV3-32A0A0A0MS00 114 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 FAM172BPA6NC97 362 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 ZSCAN5BA6NJL1 495 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 ZNF726A6NNF4 738 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 PRSS47A8MTI9 375 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 ACOT7O00154 380 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 SLC17A2O00624 439 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 TTRP02766 147 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 MAP2K6P52564 334 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 Q0VFX4 171 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 SGCAQ16586 387 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 PHYHD1Q5SRE7 291 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 HACD4Q5VWC8 232 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 ANKRD16Q6P6B7 361 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 OPN5Q6U736 354 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 YRDCQ86U90 279 aaKnown RBP9.43□□□□□ -0.9
CUX1-221ENST00000622516 NAA40Q86UY6 237 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 LRRC18Q8N456 261 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 NOXO1Q8NFA2 376 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 OR11H4Q8NGC9 324 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 OR4D6Q8NGJ1 314 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 OR51E1Q8TCB6 317 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 ADAT3Q96EY9 351 aaPredicted RBP9.43□□□□□ -0.9
CUX1-221ENST00000622516 CHIAQ9BZP6 476 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 PBOV1Q9GZY1 135 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 ZNF700Q9H0M5 742 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 C1orf198Q9H425 327 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 NOX3Q9HBY0 568 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 ZNF319Q9P2F9 582 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 ETV7Q9Y603 341 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 ZNF407Q9C0G0 2248 aa9.43□□□□□ -0.9
CUX1-221ENST00000622516 ANKRD20A5PA0PJZ0 165 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 OR2M5A3KFT3 312 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 C7orf66A4D0T2 115 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 C5orf63A6NC05 138 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 ZIC3O60481 467 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 AQP8O94778 261 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 C1QBP02746 253 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 ABOP16442 354 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 PCK2Q16822 640 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 THEM4Q5T1C6 240 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 ZNF600Q6ZNG1 722 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 TMPPEQ6ZT21 453 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 OR52N4Q8NGI2 321 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 OR52B4Q8NGK2 314 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 OR6S1Q8NH40 331 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 OR56B4Q8NH76 319 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 DEDD2Q8WXF8 326 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 SLC25A28Q96A46 364 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 CMBLQ96DG6 245 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 WDR89Q96FK6 387 aaPredicted RBP9.42□□□□□ -0.9
CUX1-221ENST00000622516 FAM206AQ9NX38 181 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 LOC100289279A0A1B0GTE1 492 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 A0A1W2PNV4 684 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 CIB4A0PJX0 185 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 HSPB2A8KAH6 182 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 TNFSF11O14788 317 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 SYT7O43581 403 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 RBBP9O75884 186 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 HSD11B1P28845 292 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 ERP29P30040 261 aaKnown RBP9.42□□□□□ -0.9
CUX1-221ENST00000622516 MPLP40238 635 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms