RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 DYSFO75923 2080 aa11.57□□□□□ -0.56
LINC00540-202ENST00000616974 E9PQ18 207 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 F5H5K5 113 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 LYNX1G3V0Z9 82 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 LILRA1O75019 489 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 LYNX1P0DP58 116 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 NAT2P11245 290 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 GSTT1P30711 240 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 GLRXP35754 106 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 GDI2P50395 445 aaKnown RBP11.56□□□□□ -0.56
LINC00540-202ENST00000616974 ALDH3A2P51648 485 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 SCRN3Q0VDG4 424 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 ZNF544Q6NX49 715 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 SHFQ7M4L6 423 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 OR10H5Q8NGA6 315 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 OR4F15Q8NGB8 312 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 MRPL24Q96A35 216 aaKnown RBP11.56□□□□□ -0.56
LINC00540-202ENST00000616974 C4orf45Q96LM5 186 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 PITX2Q99697 317 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 DOK1Q99704 481 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 FOXC2Q99958 501 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 PLK3Q9H4B4 646 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 DNAJC27Q9NZQ0 273 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 FBXL3Q9UKT7 428 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 COPS3Q9UNS2 423 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 GLCEO94923 617 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 FMO3P31513 532 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 ENTPD1P49961 510 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 PCBD1P61457 104 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 RPS7P62081 194 aaKnown RBP11.56□□□□□ -0.56
LINC00540-202ENST00000616974 RAB35Q15286 201 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 ELFN2Q5R3F8 820 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 AGAP6Q5VW22 663 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 ZBTB49Q6ZSB9 765 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 SYT9Q86SS6 491 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 TGIF2LYQ8IUE0 185 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 ALDH16A1Q8IZ83 802 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 STMN2Q93045 179 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 PIGTQ969N2 578 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 EME1Q96AY2 570 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 MARS2Q96GW9 593 aaKnown RBP11.56□□□□□ -0.56
LINC00540-202ENST00000616974 SMR3AQ99954 134 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 VRK1Q99986 396 aaPredicted RBP11.56□□□□□ -0.56
LINC00540-202ENST00000616974 CDADC1Q9BWV3 514 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 ZNF442Q9H7R0 627 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 USE1Q9NZ43 259 aa11.56□□□□□ -0.56
LINC00540-202ENST00000616974 C2CD3Q4AC94 2353 aa11.55□□□□□ -0.56
LINC00540-202ENST00000616974 ABHD16AO95870 558 aa11.55□□□□□ -0.56
LINC00540-202ENST00000616974 TRIP10Q15642 601 aa11.55□□□□□ -0.56
LINC00540-202ENST00000616974 PCK2Q16822 640 aa11.55□□□□□ -0.56
LINC00540-202ENST00000616974 AADACL4Q5VUY2 407 aa11.55□□□□□ -0.56
LINC00540-202ENST00000616974 ZNF525Q8N782 197 aa11.55□□□□□ -0.56
LINC00540-202ENST00000616974 GJC3Q8NFK1 279 aa11.55□□□□□ -0.56
LINC00540-202ENST00000616974 KLF14Q8TD94 323 aaPredicted RBP11.55□□□□□ -0.56
LINC00540-202ENST00000616974 PLEKHA8Q96JA3 519 aa11.55□□□□□ -0.56
LINC00540-202ENST00000616974 TEAD3Q99594 435 aa11.55□□□□□ -0.56
LINC00540-202ENST00000616974 ABHD6Q9BV23 337 aa11.55□□□□□ -0.56
LINC00540-202ENST00000616974 GSX2Q9BZM3 304 aa11.55□□□□□ -0.56
LINC00540-202ENST00000616974 SSX4O60224 188 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 NCR1O76036 304 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 HMGN1P05114 100 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 ADRA2AP08913 450 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 ZNF823P16415 610 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 PRKXP51817 358 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 EIF2B1Q14232 305 aaKnown RBP11.54□□□□□ -0.56
LINC00540-202ENST00000616974 SNAI3Q3KNW1 292 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 RGS7BPQ6MZT1 257 aaPredicted RBP11.54□□□□□ -0.56
LINC00540-202ENST00000616974 PLEKHG7Q6ZR37 379 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 IL17RDQ8NFM7 739 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 OR2AE1Q8NHA4 323 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 FAM81AQ8TBF8 368 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 TMEM163Q8TC26 289 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 NRG4Q8WWG1 115 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 SLAMF6Q96DU3 332 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 Q96MF0 132 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 MARCH7Q9H992 704 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 CENPMQ9NSP4 180 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 BEX4Q9NWD9 120 aaPredicted RBP11.54□□□□□ -0.56
LINC00540-202ENST00000616974 CMAHPQ9Y471 501 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 N6AMT1Q9Y5N5 214 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 ACSM4P0C7M7 580 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 PPP1CBP62140 327 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 KRTAP27-1Q3LI81 207 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 C1QTNF12Q5T7M4 302 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 SSX6Q7RTT6 188 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 DPPA2Q7Z7J5 298 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 DNAJC9Q8WXX5 260 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 INTS14Q96SY0 518 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 ATF6BQ99941 703 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 CXorf56Q9H5V9 222 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 FAIMQ9NVQ4 179 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 ZNF319Q9P2F9 582 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 HIVEP2P31629 2446 aa11.54□□□□□ -0.56
LINC00540-202ENST00000616974 MAGEB1P43366 347 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 PSG7Q13046 419 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 EFNB3Q15768 340 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 OR2AJ1Q8NGZ0 328 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 SOX7Q9BT81 388 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 MOV10Q9HCE1 1003 aaKnown RBP11.53□□□□□ -0.56
LINC00540-202ENST00000616974 MSL2Q9HCI7 577 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms