RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 CCNOP22674 350 aa16.09■□□□□ 0.17
CDX1-202ENST00000616154 WNT5AP41221 380 aa16.09■□□□□ 0.17
CDX1-202ENST00000616154 GSSP48637 474 aa16.09■□□□□ 0.17
CDX1-202ENST00000616154 COMPP49747 757 aaPredicted RBP16.09■□□□□ 0.17
CDX1-202ENST00000616154 ZNF81P51508 661 aa16.09■□□□□ 0.17
CDX1-202ENST00000616154 HILS1P60008 231 aa16.09■□□□□ 0.17
CDX1-202ENST00000616154 LCN6P62502 163 aa16.09■□□□□ 0.17
CDX1-202ENST00000616154 PPP1R8Q12972 351 aaKnown RBP16.09■□□□□ 0.17
CDX1-202ENST00000616154 TSTQ16762 297 aaKnown RBP16.09■□□□□ 0.17
CDX1-202ENST00000616154 HFEQ30201 348 aa16.09■□□□□ 0.17
CDX1-202ENST00000616154 SMARCD3Q6STE5 483 aa16.09■□□□□ 0.17
CDX1-202ENST00000616154 C1orf174Q8IYL3 243 aa16.09■□□□□ 0.17
CDX1-202ENST00000616154 ZNF101Q8IZC7 436 aa16.09■□□□□ 0.17
CDX1-202ENST00000616154 OR4M2Q8NGB6 313 aa16.09■□□□□ 0.17
CDX1-202ENST00000616154 ELMOD3Q96FG2 381 aa16.09■□□□□ 0.17
CDX1-202ENST00000616154 SEMA6AQ9H2E6 1030 aa16.09■□□□□ 0.17
CDX1-202ENST00000616154 OAZ3Q9UMX2 235 aa16.09■□□□□ 0.17
CDX1-202ENST00000616154 TIMM10BQ9Y5J6 103 aa16.09■□□□□ 0.17
CDX1-202ENST00000616154 CACNG2Q9Y698 323 aa16.09■□□□□ 0.17
CDX1-202ENST00000616154 J3QLI3 93 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 IMPA2O14732 288 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 ARPC3O15145 178 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 E2F6O75461 281 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 SCG5P05408 212 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 COX5BP10606 129 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 GUCA1AP43080 201 aaPredicted RBP16.08■□□□□ 0.16
CDX1-202ENST00000616154 MMP15P51511 669 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 ZNF718Q3SXZ3 478 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 C1orf94Q6P1W5 598 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 UNQ6126/PRO20091Q6UXV3 157 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 C1QL2Q7Z5L3 287 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 FAM216AQ8WUB2 273 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 RAB1CQ92928 201 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 RASD2Q96D21 266 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 MARS2Q96GW9 593 aaKnown RBP16.08■□□□□ 0.16
CDX1-202ENST00000616154 TIMD4Q96H15 378 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 OSBPL10Q9BXB5 764 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 TMPRSS13Q9BYE2 586 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 EIF3KQ9UBQ5 218 aaKnown RBP16.08■□□□□ 0.16
CDX1-202ENST00000616154 TMCC3Q9ULS5 477 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 ARHGAP32A7KAX9 2087 aa16.08■□□□□ 0.16
CDX1-202ENST00000616154 C12orf71A8MTZ7 269 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 G3V2T6 193 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 H3BSA7 217 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 RGS9O75916 674 aaPredicted RBP16.07■□□□□ 0.16
CDX1-202ENST00000616154 IGHV1-46P01743 117 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 GCH1P30793 250 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 IFNGR2P38484 337 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 MPV17P39210 176 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 GDI2P50395 445 aaKnown RBP16.07■□□□□ 0.16
CDX1-202ENST00000616154 RPS6KA3P51812 740 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 ACTG1P63261 375 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 RFX4Q33E94 735 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 TMEM255AQ5JRV8 349 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 OGFRL1Q5TC84 451 aaPredicted RBP16.07■□□□□ 0.16
CDX1-202ENST00000616154 MBNL2Q5VZF2 373 aaKnown RBP16.07■□□□□ 0.16
CDX1-202ENST00000616154 FAHD1Q6P587 224 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 PTCHD4Q6ZW05 846 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 ZDHHC13Q8IUH4 622 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 HS3ST5Q8IZT8 346 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 AKR7LQ8NHP1 331 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 GIPC3Q8TF64 312 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 IPCEF1Q8WWN9 437 aaPredicted RBP16.07■□□□□ 0.16
CDX1-202ENST00000616154 JMJD8Q96S16 334 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 PLA2G12AQ9BZM1 189 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 SYT4Q9H2B2 425 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 RASSF4Q9H2L5 321 aa16.07■□□□□ 0.16
CDX1-202ENST00000616154 A0A1W2PPL8 197 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 PLSCR5A0PG75 271 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 TMEM89A2RUT3 159 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 C5orf49A4QMS7 147 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 TRIM77I1YAP6 450 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 CCNB2O95067 398 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 ADH4P08319 380 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 LSM6P62312 80 aaKnown RBP16.06■□□□□ 0.16
CDX1-202ENST00000616154 KCNMB1Q16558 191 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 SPATA46Q5T0L3 261 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 PGBD2Q6P3X8 592 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 CD300LDQ6UXZ3 194 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 RFPL4BQ6ZWI9 263 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 PEG10Q86TG7 708 aaKnown RBP16.06■□□□□ 0.16
CDX1-202ENST00000616154 ALDH16A1Q8IZ83 802 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 OR10G2Q8NGC3 310 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 SLC25A40Q8TBP6 338 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 FANK1Q8TC84 345 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 KLF14Q8TD94 323 aaPredicted RBP16.06■□□□□ 0.16
CDX1-202ENST00000616154 RBM4Q9BWF3 364 aaKnown RBP16.06■□□□□ 0.16
CDX1-202ENST00000616154 DGCR6LQ9BY27 220 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 OR52D1Q9H346 318 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 CYSLTR2Q9NS75 346 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 USE1Q9NZ43 259 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 PDP1Q9P0J1 537 aaPredicted RBP16.06■□□□□ 0.16
CDX1-202ENST00000616154 CGGBP1Q9UFW8 167 aaPredicted RBP16.06■□□□□ 0.16
CDX1-202ENST00000616154 IL20RAQ9UHF4 553 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 IER3IP1Q9Y5U9 82 aa16.06■□□□□ 0.16
CDX1-202ENST00000616154 ZSCAN5BA6NJL1 495 aa16.05■□□□□ 0.16
CDX1-202ENST00000616154 SAC3D1A6NKF1 404 aa16.05■□□□□ 0.16
CDX1-202ENST00000616154 SPRY3O43610 288 aa16.05■□□□□ 0.16
CDX1-202ENST00000616154 OR10H3O60404 316 aa16.05■□□□□ 0.16
CDX1-202ENST00000616154 KHDRBS3O75525 346 aaKnown RBP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms