RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 PCBD1P61457 104 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 EIF5AP63241 154 aaKnown RBP8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 IFITM3Q01628 133 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 MFGE8Q08431 387 aaPredicted RBP8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 KMT5CQ86Y97 462 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 MAML2Q8IZL2 1156 aaPredicted RBP8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 SPACA9Q96E40 222 aaPredicted RBP8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 REEP6Q96HR9 211 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 DDOQ99489 341 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 RNF32Q9H0A6 362 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 TRAPPC2LH3BP13 241 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 HS3ST1O14792 307 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 EIF1BO60739 113 aaKnown RBP8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 STK17BO94768 372 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 ZFPL1O95159 310 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 MSL3P1P0C860 447 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 EPHA8P29322 1005 aaPredicted RBP8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 LIMS1P48059 325 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 ZNF136P52737 540 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 SKP2Q13309 424 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 FBXW12Q6X9E4 464 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 STX12Q86Y82 276 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 UBALD2Q8IYN6 164 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 GABRG1Q8N1C3 465 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 MRGPRX4Q96LA9 322 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 IGHV5-10-1A0A0J9YXX1 117 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 OR7C1O76099 320 aaPredicted RBP8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 NGFRP08138 427 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 HOXB9P17482 250 aaPredicted RBP8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 CAV2P51636 162 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 EFNA3P52797 238 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 CLDN15P56746 228 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 PHLDA2Q53GA4 152 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 DND1Q8IYX4 353 aaKnown RBP8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 GTPBP8Q8N3Z3 284 aaPredicted RBP8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 VWCEQ96DN2 955 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 LRFN1Q9P244 771 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 EYSQ5T1H1 3165 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 ZNF587BE7ETH6 402 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 ZNF44P15621 663 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 PI3P19957 117 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 PTBP1P26599 531 aaKnown RBP eCLIP8.03□□□□□ -1.129e-7■■■■□ 21.6
PDLIM5-222ENST00000615540 FOXK1P85037 733 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 EBPQ15125 230 aaKnown RBP8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 HAGHLQ6PII5 290 aaPredicted RBP8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 TRILQ7L0X0 811 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 ATG4DQ86TL0 474 aaPredicted RBP8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 SHISA5Q8N114 240 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 NPEPL1Q8NDH3 523 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 GJC3Q8NFK1 279 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 SEMA6DQ8NFY4 1073 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 OR4D9Q8NGE8 314 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 OR4D6Q8NGJ1 314 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 UPRTQ96BW1 309 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 MRM2Q9UI43 246 aaKnown RBP8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 FBXO4Q9UKT5 387 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 WASF3Q9UPY6 502 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 R4GN57 208 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 TRAV1-2A0A0B4J238 106 aa8.02□□□□□ -1.12
PDLIM5-222ENST00000615540 ZNF780AO75290 641 aaPredicted RBP8.02□□□□□ -1.12
PDLIM5-222ENST00000615540 NFYAP23511 347 aaPredicted RBP8.02□□□□□ -1.12
PDLIM5-222ENST00000615540 ACAA2P42765 397 aaKnown RBP8.02□□□□□ -1.12
PDLIM5-222ENST00000615540 CAMLGP49069 296 aa8.02□□□□□ -1.12
PDLIM5-222ENST00000615540 ECH1Q13011 328 aa8.02□□□□□ -1.12
PDLIM5-222ENST00000615540 PDCD1Q15116 288 aa8.02□□□□□ -1.12
PDLIM5-222ENST00000615540 OR52W1Q6IF63 320 aa8.02□□□□□ -1.12
PDLIM5-222ENST00000615540 AKR7LQ8NHP1 331 aa8.02□□□□□ -1.12
PDLIM5-222ENST00000615540 MFRPQ9BY79 579 aa8.02□□□□□ -1.12
PDLIM5-222ENST00000615540 LSM2Q9Y333 95 aaKnown RBP8.02□□□□□ -1.12
PDLIM5-222ENST00000615540 C5orf49A4QMS7 147 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 SDCBPO00560 298 aaPredicted RBP8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 CCL4P13236 92 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 HRH1P35367 487 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 PPIAP62937 165 aaKnown RBP8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 FZD5Q13467 585 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 WIPI1Q5MNZ9 446 aaPredicted RBP8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 TMEM81Q6P7N7 255 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 TMUB2Q71RG4 321 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 NAXDQ8IW45 347 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 TMEM185AQ8NFB2 350 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 FNDC9Q8TBE3 224 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 FBLIM1Q8WUP2 373 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 ZNF764Q96H86 408 aaPredicted RBP8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 TSNAXQ99598 290 aaKnown RBP8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 RER1O15258 196 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 CELA2AP08217 269 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 HLA-DOBP13765 273 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 LINC00303Q3SY05 128 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 OGFOD3Q6PK18 319 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 DOK3Q7L591 496 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 TSEN54Q7Z6J9 526 aaKnown RBP8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 NKAIN3Q8N8D7 197 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 OR6F1Q8NGZ6 308 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 KCNG3Q8TAE7 436 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 ALKBH3Q96Q83 286 aaPredicted RBP8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 PTTG3PQ9NZH4 202 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 TRPM6Q9BX84 2022 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 TUSC2O75896 110 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 RPA2P15927 270 aa8.02□□□□□ -1.13
PDLIM5-222ENST00000615540 CTLA4P16410 223 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms