RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 HIF3AQ9Y2N7 669 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 ZNF175Q9Y473 711 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 IGHV3-20A0A0C4DH32 117 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 C17orf51A8MQB3 221 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 F5H5K5 113 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 CD1CP29017 333 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 CASRP41180 1078 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 RABIFP47224 123 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 DEFB133Q30KQ1 61 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 LPCAT3Q6P1A2 487 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 TMEM229BQ8NBD8 167 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 OR5M8Q8NGP6 311 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 C14orf79Q96F83 325 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 PGAM5Q96HS1 289 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 SCPEP1Q9HB40 452 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 RAB22AQ9UL26 194 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 NPTNQ9Y639 398 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 HELZP42694 1942 aaKnown RBP11.35□□□□□ -0.59
LIG1-221ENST00000613670 CT45A8P0DMV1 189 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 CT45A9P0DMV2 189 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 CT45A2Q5DJT8 189 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 EXOSC6Q5RKV6 272 aaKnown RBP11.35□□□□□ -0.59
LIG1-221ENST00000613670 GLIPR1L1Q6UWM5 242 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 NEK7Q8TDX7 302 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 RNF215Q9Y6U7 377 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 SERPINA2P20848 420 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 CSF2RBP32927 897 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 MFGE8Q08431 387 aaPredicted RBP11.34□□□□□ -0.59
LIG1-221ENST00000613670 CEBPEQ15744 281 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 ZNF141Q15928 474 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 GUCA2BQ16661 112 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 VWA2Q5GFL6 755 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 LINC01590Q5TEZ4 76 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 CDC20BQ86Y33 519 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 MFSD8Q8NHS3 518 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 TOE1Q96GM8 510 aaKnown RBP11.34□□□□□ -0.59
LIG1-221ENST00000613670 METTL7AQ9H8H3 244 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 MRPS28Q9Y2Q9 187 aaKnown RBP11.34□□□□□ -0.59
LIG1-221ENST00000613670 TCF20Q9UGU0 1960 aaKnown RBP11.34□□□□□ -0.59
LIG1-221ENST00000613670 TO15178 435 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 FGF2P09038 288 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 COL9A1P20849 921 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 RPS4Y1P22090 263 aaKnown RBP11.34□□□□□ -0.59
LIG1-221ENST00000613670 KIR3DL2P43630 455 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 CAMLGP49069 296 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 TAS2R31P59538 309 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 FHL5Q5TD97 284 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 STPG1Q5TH74 334 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 ZNF321PQ8N8H1 164 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 CMSS1Q9BQ75 279 aaKnown RBP11.34□□□□□ -0.59
LIG1-221ENST00000613670 NUDT9Q9BW91 350 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 TMEM59Q9BXS4 323 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 PBX4Q9BYU1 374 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 ICAM5Q9UMF0 924 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 SNRNP200O75643 2136 aaKnown RBP11.34□□□□□ -0.59
LIG1-221ENST00000613670 ZNF850A8MQ14 1090 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 ADAP1O75689 374 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 FBLP22087 321 aaKnown RBP11.34□□□□□ -0.59
LIG1-221ENST00000613670 BIDP55957 195 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 GGTLC2Q14390 218 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 MPPED2Q15777 294 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 EEF1A1P5Q5VTE0 462 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 PRSS35Q8N3Z0 413 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 SLC22A24Q8N4F4 322 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 CLEC1AQ8NC01 280 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 OR52N5Q8NH56 324 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 MRGPRX1Q96LB2 322 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 WDR77Q9BQA1 342 aaPredicted RBP11.34□□□□□ -0.59
LIG1-221ENST00000613670 RASL12Q9NYN1 266 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 KIF26BQ2KJY2 2108 aa11.34□□□□□ -0.59
LIG1-221ENST00000613670 VSTM2BA6NLU5 285 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 MOGAT2Q3SYC2 334 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 OR51E1Q8TCB6 317 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.33□□□□□ -0.6
LIG1-221ENST00000613670 B3GALT1Q9Y5Z6 326 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 TMEM218A2RU14 115 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 SIGLEC6O43699 453 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 LYPD3O95274 346 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 PNPP00491 289 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 GABRR1P24046 479 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 ZNF41P51814 821 aaPredicted RBP11.33□□□□□ -0.6
LIG1-221ENST00000613670 GFERP55789 205 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 PPIAP62937 165 aaKnown RBP11.33□□□□□ -0.6
LIG1-221ENST00000613670 PRTGQ2VWP7 1150 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 EMC4Q5J8M3 183 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 SERINC1Q9NRX5 453 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 GMEB2Q9UKD1 530 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 TLX3O43711 291 aaPredicted RBP11.33□□□□□ -0.6
LIG1-221ENST00000613670 GLAP06280 429 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 DHPSP49366 369 aaPredicted RBP11.33□□□□□ -0.6
LIG1-221ENST00000613670 HSD17B7P56937 341 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 IAH1Q2TAA2 248 aaPredicted RBP11.33□□□□□ -0.6
LIG1-221ENST00000613670 FAM57BQ71RH2 274 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 NANPQ8TBE9 248 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 GPX8Q8TED1 209 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 SLC46A1Q96NT5 459 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 CUTCQ9NTM9 273 aa11.33□□□□□ -0.6
LIG1-221ENST00000613670 C9orf170A2RU37 121 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 A8MVM7 634 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 PRAMEF26H0Y7S4 382 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms