RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 PLEKHG7Q6ZR37 379 aa8.84□□□□□ -0.99
UPF1-213ENST00000601981 FAM220AQ7Z4H9 259 aa8.84□□□□□ -0.99
UPF1-213ENST00000601981 KCTD20Q7Z5Y7 419 aa8.84□□□□□ -0.99
UPF1-213ENST00000601981 LURAP1LQ8IV03 231 aa8.84□□□□□ -0.99
UPF1-213ENST00000601981 DMRTC2Q8IXT2 367 aaPredicted RBP8.84□□□□□ -0.99
UPF1-213ENST00000601981 ZNF433Q8N7K0 673 aaPredicted RBP8.84□□□□□ -0.99
UPF1-213ENST00000601981 OR6N2Q8NGY6 317 aa8.84□□□□□ -0.99
UPF1-213ENST00000601981 RPS4Y2Q8TD47 263 aa8.84□□□□□ -0.99
UPF1-213ENST00000601981 FAM222BQ8WU58 562 aa8.84□□□□□ -0.99
UPF1-213ENST00000601981 SMAP2Q8WU79 429 aaPredicted RBP8.84□□□□□ -0.99
UPF1-213ENST00000601981 TMEM54Q969K7 222 aa8.84□□□□□ -0.99
UPF1-213ENST00000601981 PELI1Q96FA3 418 aa8.84□□□□□ -0.99
UPF1-213ENST00000601981 KCTD7Q96MP8 289 aa8.84□□□□□ -0.99
UPF1-213ENST00000601981 MRPL13Q9BYD1 178 aaKnown RBP8.84□□□□□ -0.99
UPF1-213ENST00000601981 ACTR6Q9GZN1 396 aa8.84□□□□□ -0.99
UPF1-213ENST00000601981 MMP27Q9H306 513 aa8.84□□□□□ -0.99
UPF1-213ENST00000601981 RNF167Q9H6Y7 350 aa8.84□□□□□ -0.99
UPF1-213ENST00000601981 GPR35Q9HC97 309 aa8.84□□□□□ -0.99
UPF1-213ENST00000601981 OBP2BQ9NPH6 170 aa8.84□□□□□ -0.99
UPF1-213ENST00000601981 NPDC1Q9NQX5 325 aaPredicted RBP8.84□□□□□ -0.99
UPF1-213ENST00000601981 ST6GALNAC2Q9UJ37 374 aa8.84□□□□□ -0.99
UPF1-213ENST00000601981 GSTK1Q9Y2Q3 226 aa8.84□□□□□ -0.99
UPF1-213ENST00000601981 PMF1-BGLAPU3KQ54 211 aa8.84□□□□□ -0.99
UPF1-213ENST00000601981 TVP23AA6NH52 213 aa8.83□□□□□ -1
UPF1-213ENST00000601981 E9PI62 339 aa8.83□□□□□ -1
UPF1-213ENST00000601981 C19orf84I3L1E1 186 aa8.83□□□□□ -1
UPF1-213ENST00000601981 GABRPO00591 440 aa8.83□□□□□ -1
UPF1-213ENST00000601981 DHHO43323 396 aa8.83□□□□□ -1
UPF1-213ENST00000601981 SULT1C4O75897 302 aa8.83□□□□□ -1
UPF1-213ENST00000601981 GOSR1O95249 250 aa8.83□□□□□ -1
UPF1-213ENST00000601981 FARS2O95363 451 aaKnown RBP8.83□□□□□ -1
UPF1-213ENST00000601981 WNT11O96014 354 aa8.83□□□□□ -1
UPF1-213ENST00000601981 IL1AP01583 271 aa8.83□□□□□ -1
UPF1-213ENST00000601981 HRGP04196 525 aa8.83□□□□□ -1
UPF1-213ENST00000601981 ITGA5P08648 1049 aa8.83□□□□□ -1
UPF1-213ENST00000601981 QDPRP09417 244 aa8.83□□□□□ -1
UPF1-213ENST00000601981 INHBBP09529 407 aa8.83□□□□□ -1
UPF1-213ENST00000601981 TACSTD2P09758 323 aa8.83□□□□□ -1
UPF1-213ENST00000601981 HOXB1P14653 301 aaPredicted RBP8.83□□□□□ -1
UPF1-213ENST00000601981 IGFBP2P18065 325 aa8.83□□□□□ -1
UPF1-213ENST00000601981 ALOX5APP20292 161 aa8.83□□□□□ -1
UPF1-213ENST00000601981 EDNRAP25101 427 aa8.83□□□□□ -1
UPF1-213ENST00000601981 GRNP28799 593 aaKnown RBP8.83□□□□□ -1
UPF1-213ENST00000601981 UBE2NP61088 152 aaKnown RBP8.83□□□□□ -1
UPF1-213ENST00000601981 EGR3Q06889 387 aa8.83□□□□□ -1
UPF1-213ENST00000601981 CDK5R1Q15078 307 aa8.83□□□□□ -1
UPF1-213ENST00000601981 ZNF404Q494X3 552 aa8.83□□□□□ -1
UPF1-213ENST00000601981 TEX30Q5JUR7 227 aa8.83□□□□□ -1
UPF1-213ENST00000601981 TIMM23BQ5SRD1 257 aa8.83□□□□□ -1
UPF1-213ENST00000601981 C9orf135Q5VTT2 229 aa8.83□□□□□ -1
UPF1-213ENST00000601981 C22orf42Q6IC83 251 aa8.83□□□□□ -1
UPF1-213ENST00000601981 RPL22L1Q6P5R6 122 aaKnown RBP8.83□□□□□ -1
UPF1-213ENST00000601981 ANKRD16Q6P6B7 361 aa8.83□□□□□ -1
UPF1-213ENST00000601981 CCDC36Q8IYA8 594 aa8.83□□□□□ -1
UPF1-213ENST00000601981 ZNF454Q8N9F8 522 aa8.83□□□□□ -1
UPF1-213ENST00000601981 SYT14Q8NB59 555 aa8.83□□□□□ -1
UPF1-213ENST00000601981 OR6Q1Q8NGQ2 317 aa8.83□□□□□ -1
UPF1-213ENST00000601981 OTOSQ8NHW6 89 aa8.83□□□□□ -1
UPF1-213ENST00000601981 MCFD2Q8NI22 146 aa8.83□□□□□ -1
UPF1-213ENST00000601981 S100ZQ8WXG8 99 aa8.83□□□□□ -1
UPF1-213ENST00000601981 ASB17Q8WXJ9 295 aa8.83□□□□□ -1
UPF1-213ENST00000601981 NANOS1Q8WY41 292 aaKnown RBP8.83□□□□□ -1
UPF1-213ENST00000601981 HSD17B8Q92506 261 aa8.83□□□□□ -1
UPF1-213ENST00000601981 TMEM203Q969S6 136 aa8.83□□□□□ -1
UPF1-213ENST00000601981 S100PBPQ96BU1 408 aa8.83□□□□□ -1
UPF1-213ENST00000601981 SMIM19Q96E16 107 aa8.83□□□□□ -1
UPF1-213ENST00000601981 FOXB1Q99853 325 aa8.83□□□□□ -1
UPF1-213ENST00000601981 TMED9Q9BVK6 235 aa8.83□□□□□ -1
UPF1-213ENST00000601981 KCNN2Q9H2S1 579 aa8.83□□□□□ -1
UPF1-213ENST00000601981 RERGLQ9H628 205 aa8.83□□□□□ -1
UPF1-213ENST00000601981 ACOXLQ9NUZ1 547 aa8.83□□□□□ -1
UPF1-213ENST00000601981 MRPL22Q9NWU5 206 aaKnown RBP8.83□□□□□ -1
UPF1-213ENST00000601981 KCNN3Q9UGI6 736 aa8.83□□□□□ -1
UPF1-213ENST00000601981 LAMP5Q9UJQ1 280 aa8.83□□□□□ -1
UPF1-213ENST00000601981 GNG8Q9UK08 70 aa8.83□□□□□ -1
UPF1-213ENST00000601981 KLHDC2Q9Y2U9 406 aa8.83□□□□□ -1
UPF1-213ENST00000601981 AMDHD2Q9Y303 409 aa8.83□□□□□ -1
UPF1-213ENST00000601981 SIRT4Q9Y6E7 314 aaPredicted RBP8.83□□□□□ -1
UPF1-213ENST00000601981 OR5H1A6NKK0 313 aa8.82□□□□□ -1
UPF1-213ENST00000601981 GPRIN2O60269 458 aa8.82□□□□□ -1
UPF1-213ENST00000601981 ABHD16AO95870 558 aa8.82□□□□□ -1
UPF1-213ENST00000601981 SERPINA3P01011 423 aa8.82□□□□□ -1
UPF1-213ENST00000601981 HLA-DQA2P01906 255 aa8.82□□□□□ -1
UPF1-213ENST00000601981 KRT8P05787 483 aa8.82□□□□□ -1
UPF1-213ENST00000601981 EPXP11678 715 aa8.82□□□□□ -1
UPF1-213ENST00000601981 NPR2P20594 1047 aa8.82□□□□□ -1
UPF1-213ENST00000601981 CCKARP32238 428 aa8.82□□□□□ -1
UPF1-213ENST00000601981 ENTPD1P49961 510 aa8.82□□□□□ -1
UPF1-213ENST00000601981 GDI2P50395 445 aaKnown RBP8.82□□□□□ -1
UPF1-213ENST00000601981 DCTN2Q13561 401 aaKnown RBP8.82□□□□□ -1
UPF1-213ENST00000601981 PPA1Q15181 289 aa8.82□□□□□ -1
UPF1-213ENST00000601981 GABRA6Q16445 453 aa8.82□□□□□ -1
UPF1-213ENST00000601981 HIST3H3Q16695 136 aa8.82□□□□□ -1
UPF1-213ENST00000601981 NRN1LQ496H8 165 aa8.82□□□□□ -1
UPF1-213ENST00000601981 SLC18B1Q6NT16 456 aa8.82□□□□□ -1
UPF1-213ENST00000601981 ARL9Q6T311 187 aa8.82□□□□□ -1
UPF1-213ENST00000601981 DPY19L4Q7Z388 723 aa8.82□□□□□ -1
UPF1-213ENST00000601981 DPPA2Q7Z7J5 298 aa8.82□□□□□ -1
UPF1-213ENST00000601981 WDFY1Q8IWB7 410 aa8.82□□□□□ -1
UPF1-213ENST00000601981 PIP4P2Q8N4L2 257 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms