RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 OR6N1Q8NGY5 312 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 OR2AJ1Q8NGZ0 328 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 ADAT3Q96EY9 351 aaPredicted RBP12.8□□□□□ -0.36
VRK3-217ENST00000599538 SIGLEC12Q96PQ1 595 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 ZNF416Q9BWM5 594 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 CACNG6Q9BXT2 260 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 HES7Q9BYE0 225 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 A0A0A6YYJ9 748 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 TMEM272A0A1B0GTI8 110 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 ZNF878C9JN71 531 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 NPIPA2E9PIF3 369 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 E9PLN8 166 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 NPIPA3F8WFD2 350 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 TRAPPC6AO75865 159 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 GLSO94925 669 aaPredicted RBP12.79□□□□□ -0.36
VRK3-217ENST00000599538 CD96P40200 585 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 CSNK1A1P48729 337 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 FOXO1Q12778 655 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 HYAL4Q2M3T9 481 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 TMEM244Q5VVB8 128 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 SFRP4Q6FHJ7 346 aaPredicted RBP12.79□□□□□ -0.36
VRK3-217ENST00000599538 KLHL24Q6TFL4 600 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 TMEM123Q8N131 208 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 THRSPQ92748 146 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 DPAGT1Q9H3H5 408 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 PLEKHA1Q9HB21 404 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 MCUBQ9NWR8 336 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 LOC400499M0QZD8 3231 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 KMT2EQ8IZD2 1858 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 DMXL1Q9Y485 3027 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 A0A1B0GTI1 187 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 CIB4A0PJX0 185 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 EIF1BO60739 113 aaKnown RBP12.79□□□□□ -0.36
VRK3-217ENST00000599538 KRT33AO76009 404 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 TNFSF15O95150 251 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 UBCP0CG48 685 aaKnown RBP12.79□□□□□ -0.36
VRK3-217ENST00000599538 DCTDP32321 178 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 CSNK2A1P68400 391 aaPredicted RBP12.79□□□□□ -0.36
VRK3-217ENST00000599538 KCNMB1Q16558 191 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 TMEM164Q5U3C3 297 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 OR10K2Q6IF99 312 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 ANKRD16Q6P6B7 361 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 RNF144BQ7Z419 303 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 HDDC2Q7Z4H3 204 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 NAA40Q86UY6 237 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 LYPD6Q86Y78 171 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 OR1J2Q8NGS2 313 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 OR51E1Q8TCB6 317 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 FCAMRQ8WWV6 532 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 ROBO4Q8WZ75 1007 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 TMEM54Q969K7 222 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 HRASLSQ9HDD0 168 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 ZNF275Q9NSD4 429 aaPredicted RBP12.79□□□□□ -0.36
VRK3-217ENST00000599538 LRFN1Q9P244 771 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 CKLFQ9UBR5 152 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 RHBDD3Q9Y3P4 386 aa12.79□□□□□ -0.36
VRK3-217ENST00000599538 CENPXA8MT69 81 aa12.78□□□□□ -0.36
VRK3-217ENST00000599538 XRCC3O43542 346 aa12.78□□□□□ -0.36
VRK3-217ENST00000599538 NEURL1O76050 574 aa12.78□□□□□ -0.36
VRK3-217ENST00000599538 FCER2P06734 321 aa12.78□□□□□ -0.36
VRK3-217ENST00000599538 HSD11B1P28845 292 aa12.78□□□□□ -0.36
VRK3-217ENST00000599538 ZNF121P58317 390 aaPredicted RBP12.78□□□□□ -0.36
VRK3-217ENST00000599538 GUCA2AQ02747 115 aa12.78□□□□□ -0.36
VRK3-217ENST00000599538 DYRK1AQ13627 763 aa12.78□□□□□ -0.36
VRK3-217ENST00000599538 POU4F3Q15319 338 aa12.78□□□□□ -0.36
VRK3-217ENST00000599538 RSPO4Q2I0M5 234 aaPredicted RBP12.78□□□□□ -0.36
VRK3-217ENST00000599538 ZFP69Q49AA0 526 aa12.78□□□□□ -0.36
VRK3-217ENST00000599538 LRRC18Q8N456 261 aa12.78□□□□□ -0.36
VRK3-217ENST00000599538 JAGN1Q8N5M9 183 aa12.78□□□□□ -0.36
VRK3-217ENST00000599538 OR4D6Q8NGJ1 314 aa12.78□□□□□ -0.36
VRK3-217ENST00000599538 ADAMTS17Q8TE56 1095 aa12.78□□□□□ -0.36
VRK3-217ENST00000599538 NABP1Q96AH0 204 aa12.78□□□□□ -0.36
VRK3-217ENST00000599538 ZNF486Q96H40 463 aaPredicted RBP12.78□□□□□ -0.36
VRK3-217ENST00000599538 BOLA1Q9Y3E2 137 aa12.78□□□□□ -0.36
VRK3-217ENST00000599538 LOC100289279A0A1B0GTE1 492 aa12.77□□□□□ -0.36
VRK3-217ENST00000599538 GGT3PA6NGU5 568 aa12.77□□□□□ -0.36
VRK3-217ENST00000599538 TTLL8A6PVC2 850 aa12.77□□□□□ -0.36
VRK3-217ENST00000599538 SYT7O43581 403 aa12.77□□□□□ -0.36
VRK3-217ENST00000599538 SULT1B1O43704 296 aa12.77□□□□□ -0.36
VRK3-217ENST00000599538 TLX3O43711 291 aaPredicted RBP12.77□□□□□ -0.36
VRK3-217ENST00000599538 CXCL13O43927 109 aa12.77□□□□□ -0.36
VRK3-217ENST00000599538 CD37P11049 281 aa12.77□□□□□ -0.36
VRK3-217ENST00000599538 HTR2CP28335 458 aa12.77□□□□□ -0.36
VRK3-217ENST00000599538 PSMA6P60900 246 aaKnown RBP12.77□□□□□ -0.36
VRK3-217ENST00000599538 RRAS2P62070 204 aaPredicted RBP12.77□□□□□ -0.36
VRK3-217ENST00000599538 BTG1P62324 171 aa12.77□□□□□ -0.36
VRK3-217ENST00000599538 GALK2Q01415 458 aa12.77□□□□□ -0.36
VRK3-217ENST00000599538 IFITM2Q01629 132 aa12.77□□□□□ -0.36
VRK3-217ENST00000599538 ENDOGQ14249 297 aaKnown RBP12.77□□□□□ -0.36
VRK3-217ENST00000599538 GLT8D1Q68CQ7 371 aa12.77□□□□□ -0.36
VRK3-217ENST00000599538 PLXDC2Q6UX71 529 aa12.77□□□□□ -0.36
VRK3-217ENST00000599538 SUMF1Q8NBK3 374 aa12.77□□□□□ -0.36
VRK3-217ENST00000599538 OR8B12Q8NGG6 310 aa12.77□□□□□ -0.36
VRK3-217ENST00000599538 SFXN2Q96NB2 322 aa12.77□□□□□ -0.36
VRK3-217ENST00000599538 NAA11Q9BSU3 229 aaPredicted RBP12.77□□□□□ -0.36
VRK3-217ENST00000599538 RBM24Q9BX46 236 aaKnown RBP12.77□□□□□ -0.36
VRK3-217ENST00000599538 BEX1Q9HBH7 125 aa12.77□□□□□ -0.36
VRK3-217ENST00000599538 PLA2G3Q9NZ20 509 aa12.77□□□□□ -0.36
VRK3-217ENST00000599538 FOXD3Q9UJU5 478 aaPredicted RBP12.77□□□□□ -0.36
VRK3-217ENST00000599538 FLVCR2Q9UPI3 526 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms