RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 TMEM163Q8TC26 289 aa12.18□□□□□ -0.46
SHKBP1-217ENST00000598558 STMN2Q93045 179 aa12.18□□□□□ -0.46
SHKBP1-217ENST00000598558 SORCS2Q96PQ0 1159 aa12.18□□□□□ -0.46
SHKBP1-217ENST00000598558 INTS14Q96SY0 518 aa12.18□□□□□ -0.46
SHKBP1-217ENST00000598558 C9orf16Q9BUW7 83 aa12.18□□□□□ -0.46
SHKBP1-217ENST00000598558 HDHD2Q9H0R4 259 aa12.18□□□□□ -0.46
SHKBP1-217ENST00000598558 TOR3AQ9H497 397 aa12.18□□□□□ -0.46
SHKBP1-217ENST00000598558 NKX1-2Q9UD57 310 aaPredicted RBP12.18□□□□□ -0.46
SHKBP1-217ENST00000598558 AASSQ9UDR5 926 aa12.18□□□□□ -0.46
SHKBP1-217ENST00000598558 DUSP13Q9UII6 198 aa12.18□□□□□ -0.46
SHKBP1-217ENST00000598558 DSCAMO60469 2012 aa12.18□□□□□ -0.46
SHKBP1-217ENST00000598558 USF3Q68DE3 2245 aa12.18□□□□□ -0.46
SHKBP1-217ENST00000598558 PLCE1Q9P212 2302 aa12.17□□□□□ -0.46
SHKBP1-217ENST00000598558 IGLV3-9A0A075B6K5 115 aa12.17□□□□□ -0.46
SHKBP1-217ENST00000598558 H7C417 338 aa12.17□□□□□ -0.46
SHKBP1-217ENST00000598558 PRODHO43272 600 aa12.17□□□□□ -0.46
SHKBP1-217ENST00000598558 ADRA2AP08913 450 aa12.17□□□□□ -0.46
SHKBP1-217ENST00000598558 ACSM4P0C7M7 580 aa12.17□□□□□ -0.46
SHKBP1-217ENST00000598558 NAA10P41227 235 aaPredicted RBP12.17□□□□□ -0.46
SHKBP1-217ENST00000598558 Q5PR19 223 aa12.17□□□□□ -0.46
SHKBP1-217ENST00000598558 COLCA1Q6ZS62 124 aa12.17□□□□□ -0.46
SHKBP1-217ENST00000598558 SPATC1Q76KD6 591 aa12.17□□□□□ -0.46
SHKBP1-217ENST00000598558 OR6N2Q8NGY6 317 aa12.17□□□□□ -0.46
SHKBP1-217ENST00000598558 KLF14Q8TD94 323 aaPredicted RBP12.17□□□□□ -0.46
SHKBP1-217ENST00000598558 SLAMF6Q96DU3 332 aa12.17□□□□□ -0.46
SHKBP1-217ENST00000598558 ABHD6Q9BV23 337 aa12.17□□□□□ -0.46
SHKBP1-217ENST00000598558 BCL2L14Q9BZR8 327 aa12.17□□□□□ -0.46
SHKBP1-217ENST00000598558 TBCCD1Q9NVR7 557 aa12.17□□□□□ -0.46
SHKBP1-217ENST00000598558 EIF3KQ9UBQ5 218 aaKnown RBP12.17□□□□□ -0.46
SHKBP1-217ENST00000598558 ATPIF1Q9UII2 106 aa12.17□□□□□ -0.46
SHKBP1-217ENST00000598558 HEATR1Q9H583 2144 aaKnown RBP12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 CREBBPQ92793 2442 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 PRR32B1ATL7 298 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 F5H5K5 113 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 ABHD16AO95870 558 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 MRPL3P09001 348 aaKnown RBP12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 OTX1P32242 354 aaPredicted RBP12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 EVX1P49640 407 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 BLVRAP53004 296 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 RPS23P62266 143 aaKnown RBP12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 EIF2B1Q14232 305 aaKnown RBP12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 LRRC36Q1X8D7 754 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 SLC35D3Q5M8T2 416 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 DNM1P46Q6ZS02 220 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 MEPCEQ7L2J0 689 aaKnown RBP12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 GALNT4Q8N4A0 578 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 SYNPRQ8TBG9 265 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 IPCEF1Q8WWN9 437 aaPredicted RBP12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 EME1Q96AY2 570 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 TRMT61AQ96FX7 289 aaKnown RBP12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 HRASLS5Q96KN8 279 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 ATF6BQ99941 703 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 TEX12Q9BXU0 123 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 CENPMQ9NSP4 180 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 DDX28Q9NUL7 540 aaKnown RBP12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 TAAR3PQ9P1P4 343 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 PMF1-BGLAPU3KQ54 211 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 VPS13CQ709C8 3753 aa12.16□□□□□ -0.46
SHKBP1-217ENST00000598558 TRIM64A6NGJ6 449 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 TRIM64BA6NI03 449 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 VSTM5A8MXK1 200 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 SSX4O60224 188 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 IGHV3-13P01766 116 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 NAT2P11245 290 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 PEX2P28328 305 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 PPOXP50336 477 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 PRKXP51817 358 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 RAD23AP54725 363 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 PRSS12P56730 875 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 RPS7P62081 194 aaKnown RBP12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 SNRPD2P62316 118 aaKnown RBP12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 PSG7Q13046 419 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 HLXQ14774 488 aaPredicted RBP12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 TRIP10Q15642 601 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 NXNL2Q5VZ03 156 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 SHEQ5VZ18 495 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 MBNL2Q5VZF2 373 aaKnown RBP12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 PRSS57Q6UWY2 283 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 TGIF2LYQ8IUE0 185 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 CIARTQ8N365 385 aaPredicted RBP12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 RFLNBQ8N5W9 214 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 OTOSQ8NHW6 89 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 RNF133Q8WVZ7 376 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 Q96MF0 132 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 ZNF582Q96NG8 517 aaPredicted RBP12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 DCLRE1CQ96SD1 692 aaKnown RBP12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 VRK1Q99986 396 aaPredicted RBP12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 C1QTNF5Q9BXJ0 243 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 TPK1Q9H3S4 243 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 ELOVL3Q9HB03 270 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 FAM118AQ9NWS6 357 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 DNAJC27Q9NZQ0 273 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 ENOPH1Q9UHY7 261 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 COPS3Q9UNS2 423 aa12.15□□□□□ -0.46
SHKBP1-217ENST00000598558 F12P00748 615 aaPredicted RBP12.14□□□□□ -0.47
SHKBP1-217ENST00000598558 GABRB1P18505 474 aa12.14□□□□□ -0.47
SHKBP1-217ENST00000598558 ALOX5APP20292 161 aa12.14□□□□□ -0.47
SHKBP1-217ENST00000598558 KLF3P57682 345 aaPredicted RBP12.14□□□□□ -0.47
SHKBP1-217ENST00000598558 ECH1Q13011 328 aa12.14□□□□□ -0.47
SHKBP1-217ENST00000598558 ZNF718Q3SXZ3 478 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms