RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 SLC18B1Q6NT16 456 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 CORO6Q6QEF8 472 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 CD300LDQ6UXZ3 194 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 SPATA24Q86W54 205 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 HIPK1Q86Z02 1210 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 LINC00346Q8IVM7 164 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 PROKR2Q8NFJ6 384 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 OR2T33Q8NG76 320 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 OR4Q3Q8NH05 313 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 HPS1Q92902 700 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 COG8Q96MW5 612 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 DDOQ99489 341 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 SOX7Q9BT81 388 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 TSSK6Q9BXA6 273 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 SAP30LQ9HAJ7 183 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 TUBG2Q9NRH3 451 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 CYSLTR2Q9NS75 346 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 ARMC1Q9NVT9 282 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 MRPL22Q9NWU5 206 aaKnown RBP12.86□□□□□ -0.35
TRIM28-205ENST00000595028 TMEM160Q9NX00 188 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 KCNG2Q9UJ96 466 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 BAIAP2Q9UQB8 552 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 POMPQ9Y244 141 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 LOC100289279A0A1B0GTE1 492 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 TCRBV3S1A0A5B6 114 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 HAX1O00165 279 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 TIMM8AO60220 97 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-205ENST00000595028 CDC14BO60729 498 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 IGHV1-46P01743 117 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 HLA-DQA2P01906 255 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 PYCR1P32322 319 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 GGT2P36268 569 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 LIPAP38571 399 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 RGS6P49758 472 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 PSG7Q13046 419 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 TSTQ16762 297 aaKnown RBP12.85□□□□□ -0.35
TRIM28-205ENST00000595028 ZNF362Q5T0B9 420 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-205ENST00000595028 FAM166AQ6J272 317 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 CFAP77Q6ZQR2 320 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 USP51Q70EK9 711 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 SLC37A3Q8NCC5 494 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 OR9Q1Q8NGQ5 310 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 OR2T4Q8NH00 348 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 GIPC3Q8TF64 312 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 NIPSNAP1Q9BPW8 284 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 RBM4Q9BWF3 364 aaKnown RBP12.85□□□□□ -0.35
TRIM28-205ENST00000595028 DECR2Q9NUI1 292 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 CYB5R1Q9UHQ9 305 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 KLHL21Q9UJP4 597 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 KCNS2Q9ULS6 477 aa12.85□□□□□ -0.35
TRIM28-205ENST00000595028 SVEP1Q4LDE5 3571 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 IGHV1-69-2A0A0G2JMI3 117 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 PHF1O43189 567 aaPredicted RBP12.84□□□□□ -0.35
TRIM28-205ENST00000595028 TPD52L2O43399 206 aaKnown RBP12.84□□□□□ -0.35
TRIM28-205ENST00000595028 PPIHO43447 177 aaKnown RBP12.84□□□□□ -0.35
TRIM28-205ENST00000595028 SPRY3O43610 288 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 LMX1BO60663 402 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 KITLGP21583 273 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 IGFBP5P24593 272 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 CRYBB2P43320 205 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 TMEM33P57088 247 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 BNIP1Q12981 228 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 CCNIQ14094 377 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 CRMP1Q14194 572 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 KRTAP27-1Q3LI81 207 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 CHRFAM7AQ494W8 412 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 TMEM179BQ7Z7N9 219 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 OR2AJ1Q8NGZ0 328 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 TEX47Q8TBZ9 253 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 ELMOD3Q96FG2 381 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 FEVQ99581 238 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 CADM1Q9BY67 442 aaKnown RBP12.84□□□□□ -0.35
TRIM28-205ENST00000595028 PNRC2Q9NPJ4 139 aaKnown RBP12.84□□□□□ -0.35
TRIM28-205ENST00000595028 PURGQ9UJV8 347 aaKnown RBP12.84□□□□□ -0.35
TRIM28-205ENST00000595028 CDC42EP3Q9UKI2 254 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 STARD10Q9Y365 291 aa12.84□□□□□ -0.35
TRIM28-205ENST00000595028 RIIAD1A6NNX1 92 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 GNGT2O14610 69 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 FKBP6O75344 327 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 E2F6O75461 281 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 IFNGP01579 166 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 CD55P08174 381 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 ZNF3P17036 446 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 SLC25A1P53007 311 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 CDH15P55291 814 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 CBX1P83916 185 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 ECH1Q13011 328 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 LYPD4Q6UWN0 246 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 OR51L1Q8NGJ5 315 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 CLDND2Q8NHS1 167 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 ZNRF4Q8WWF5 429 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 APOBEC3DQ96AK3 386 aaPredicted RBP12.83□□□□□ -0.36
TRIM28-205ENST00000595028 CMBLQ96DG6 245 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 C1orf159Q96HA4 380 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 MAP6Q96JE9 813 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 DIRC2Q96SL1 478 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 PITX2Q99697 317 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 ATF6BQ99941 703 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 CDADC1Q9BWV3 514 aa12.83□□□□□ -0.36
TRIM28-205ENST00000595028 NMNAT2Q9BZQ4 307 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms