RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 ACSM4P0C7M7 580 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 CD37P11049 281 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 MNDAP41218 407 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 LHX2P50458 406 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 HIST1H3AP68431 136 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 MRPS10P82664 201 aaKnown RBP12.54□□□□□ -0.4
LIG3-205ENST00000585941 MADCAM1Q13477 382 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 TGIF1Q15583 401 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 HIST2H3PS2Q5TEC6 136 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 ZNF57Q68EA5 555 aaPredicted RBP12.54□□□□□ -0.4
LIG3-205ENST00000585941 HIST2H3AQ71DI3 136 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 TMPRSS7Q7RTY8 843 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 GALNTL5Q7Z4T8 443 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 LUZP2Q86TE4 346 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 CMTM4Q8IZR5 234 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 GPR137CQ8N3F9 429 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 TMEM251Q8N6I4 163 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 NKAIN3Q8N8D7 197 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 ZFP62Q8NB50 900 aaPredicted RBP12.54□□□□□ -0.4
LIG3-205ENST00000585941 TMEM178AQ8NBL3 297 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 CPT1CQ8TCG5 803 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 CHAC2Q8WUX2 184 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 TMEM45BQ96B21 275 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 FOXRED1Q96CU9 486 aaPredicted RBP12.54□□□□□ -0.4
LIG3-205ENST00000585941 ABHD1Q96SE0 405 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 ZNF416Q9BWM5 594 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 RBM24Q9BX46 236 aaKnown RBP12.54□□□□□ -0.4
LIG3-205ENST00000585941 PNRC2Q9NPJ4 139 aaKnown RBP12.54□□□□□ -0.4
LIG3-205ENST00000585941 ZNF275Q9NSD4 429 aaPredicted RBP12.54□□□□□ -0.4
LIG3-205ENST00000585941 NPAP1Q9NZP6 1156 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 OR5V1Q9UGF6 321 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 NCOA6Q14686 2063 aaPredicted RBP12.53□□□□□ -0.4
LIG3-205ENST00000585941 IGKV3D-15A0A087WSY6 115 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 A0A1B0GVI7 797 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 SYT7O43581 403 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 SYNGR4O95473 234 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 ACTL6AO96019 429 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 MEOX1P50221 254 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 RAB11BQ15907 218 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 PHYHD1Q5SRE7 291 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 FAM27BQ5VT28 67 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 DUSP18Q8NEJ0 188 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 ROBO4Q8WZ75 1007 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 TRIM63Q969Q1 353 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 NABP1Q96AH0 204 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 HAVCR1Q96D42 359 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 ITPKCQ96DU7 683 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 SLC25A38Q96DW6 304 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 SCMH1Q96GD3 660 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 HES7Q9BYE0 225 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 ACKR4Q9NPB9 350 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 SLC17A5Q9NRA2 495 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 FAM86C1Q9NVL1 165 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 CLEC4AQ9UMR7 237 aa12.53□□□□□ -0.4
LIG3-205ENST00000585941 CENPXA8MT69 81 aa12.52□□□□□ -0.4
LIG3-205ENST00000585941 ACOT7O00154 380 aa12.52□□□□□ -0.4
LIG3-205ENST00000585941 P2RY10O00398 339 aa12.52□□□□□ -0.4
LIG3-205ENST00000585941 RER1O15258 196 aa12.52□□□□□ -0.4
LIG3-205ENST00000585941 ZNF708P17019 499 aa12.52□□□□□ -0.4
LIG3-205ENST00000585941 MAGEA5P43359 124 aa12.52□□□□□ -0.4
LIG3-205ENST00000585941 CLDN18P56856 261 aa12.52□□□□□ -0.4
LIG3-205ENST00000585941 ARG2P78540 354 aa12.52□□□□□ -0.4
LIG3-205ENST00000585941 ENDOGQ14249 297 aaKnown RBP12.52□□□□□ -0.4
LIG3-205ENST00000585941 SERPINA12Q8IW75 414 aa12.52□□□□□ -0.4
LIG3-205ENST00000585941 DNAAF1Q8NEP3 725 aa12.52□□□□□ -0.4
LIG3-205ENST00000585941 SYNPRQ8TBG9 265 aa12.52□□□□□ -0.4
LIG3-205ENST00000585941 C7orf50Q9BRJ6 194 aaKnown RBP12.52□□□□□ -0.4
LIG3-205ENST00000585941 PARPBPQ9NWS1 579 aa12.52□□□□□ -0.4
LIG3-205ENST00000585941 EMC3Q9P0I2 261 aa12.52□□□□□ -0.4
LIG3-205ENST00000585941 FAM240BA0A1B0GVZ2 78 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 OR6C65A6NJZ3 312 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 A6NL46 340 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 FAM166BA8MTA8 275 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 H3BSH0 61 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 EEF1E1O43324 174 aaKnown RBP12.51□□□□□ -0.41
LIG3-205ENST00000585941 SSX4O60224 188 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 CST2P09228 141 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 CX3CR1P49238 355 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 CLDN12P56749 244 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 PPIAP62937 165 aaKnown RBP12.51□□□□□ -0.41
LIG3-205ENST00000585941 STK11Q15831 433 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 FAM166AQ6J272 317 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 PLET1Q6UQ28 207 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 FAM109AQ8N4B1 249 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 ZNF283Q8N7M2 679 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 CCDC54Q8NEL0 328 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 OR5D14Q8NGL3 314 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 OR6M1Q8NGM8 313 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 SMIM4Q8WVI0 70 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 SLC39A7Q92504 469 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 ZFP3Q96NJ6 502 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 NEDD4LQ96PU5 975 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 LRFN3Q9BTN0 628 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 RNF122Q9H9V4 155 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 TAS2R4Q9NYW5 299 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 MCTS1Q9ULC4 181 aaKnown RBP12.51□□□□□ -0.41
LIG3-205ENST00000585941 MRPS7Q9Y2R9 242 aaKnown RBP12.51□□□□□ -0.41
LIG3-205ENST00000585941 LOC100289279A0A1B0GTE1 492 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 A0A1B0GVC2 190 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 A6NIN4 97 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms