RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 SDR9C7Q8NEX9 313 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 OR9Q2Q8NGE9 314 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 OR52E2Q8NGJ4 325 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 CCL17Q92583 94 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 UTP4Q969X6 686 aaKnown RBP10.53□□□□□ -0.72
SS18-225ENST00000585121 CMBLQ96DG6 245 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 COQ7Q99807 217 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 TREM2Q9NZC2 230 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 STARD10Q9Y365 291 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 SAMHD1Q9Y3Z3 626 aaKnown RBP10.53□□□□□ -0.72
SS18-225ENST00000585121 YLPM1P49750 1951 aaKnown RBP10.53□□□□□ -0.72
SS18-225ENST00000585121 MALRD1Q5VYJ5 2156 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 TCRBV5S2A0A599 114 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 DCTN6O00399 190 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 SURF4O15260 269 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 GPANK1O95872 356 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 GASTP01350 101 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 ADH4P08319 380 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 GAAP10253 952 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 ZNF823P16415 610 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 SRP14P37108 136 aaKnown RBP10.53□□□□□ -0.72
SS18-225ENST00000585121 DVL1P1P54792 670 aaPredicted RBP10.53□□□□□ -0.72
SS18-225ENST00000585121 TNFAIP6P98066 277 aaPredicted RBP10.53□□□□□ -0.72
SS18-225ENST00000585121 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.53□□□□□ -0.72
SS18-225ENST00000585121 ECH1Q13011 328 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 MEP1BQ16820 701 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 OR2T5Q6IEZ7 315 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 RASSF6Q6ZTQ3 369 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 IL17RELQ6ZVW7 336 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 CXXC5Q7LFL8 322 aaKnown RBP10.53□□□□□ -0.72
SS18-225ENST00000585121 ZBTB46Q86UZ6 589 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 AQP11Q8NBQ7 271 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 PROKR2Q8NFJ6 384 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 SLC26A10Q8NG04 563 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 OR2T29Q8NH02 315 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 OR51F2Q8NH61 342 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 SLC7A6Q92536 515 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 APOBEC3DQ96AK3 386 aaPredicted RBP10.53□□□□□ -0.72
SS18-225ENST00000585121 CCDC124Q96CT7 223 aaKnown RBP10.53□□□□□ -0.72
SS18-225ENST00000585121 HAVCR1Q96D42 359 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 RAB39BQ96DA2 213 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 ASB9Q96DX5 294 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 PITX2Q99697 317 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 MDFIQ99750 246 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 THTPAQ9BU02 230 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 EGLN3Q9H6Z9 239 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 MSL2Q9HCI7 577 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 TBC1D23Q9NUY8 699 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 IL20Q9NYY1 176 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 KCNG2Q9UJ96 466 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 KLHL21Q9UJP4 597 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 PURGQ9UJV8 347 aaKnown RBP10.53□□□□□ -0.72
SS18-225ENST00000585121 SVEP1Q4LDE5 3571 aa10.53□□□□□ -0.72
SS18-225ENST00000585121 DNHD1Q96M86 4753 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 OR6C68A6NDL8 312 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 ZSCAN5BA6NJL1 495 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 RNF212BA8MTL3 300 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 RAP2AP10114 183 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 RAC2P15153 192 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 HOXB6P17509 224 aaKnown RBP10.52□□□□□ -0.73
SS18-225ENST00000585121 TNFRSF1AP19438 455 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 KITLGP21583 273 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 THBS2P35442 1172 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 HIST1H3AP68431 136 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 ELF3P78545 371 aaPredicted RBP10.52□□□□□ -0.73
SS18-225ENST00000585121 MS4A2Q01362 244 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 COX10Q12887 443 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 TRAP1Q12931 704 aaKnown RBP10.52□□□□□ -0.73
SS18-225ENST00000585121 CDK5R2Q13319 367 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 GK3PQ14409 553 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 MICAQ29983 383 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 AVPI1Q5T686 147 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 HIST2H3PS2Q5TEC6 136 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 CORO6Q6QEF8 472 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 HIST2H3AQ71DI3 136 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 OR4C15Q8NGM1 316 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 OR2T4Q8NH00 348 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 TMEM158Q8WZ71 300 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 TSSK6Q9BXA6 273 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 BAIAP2Q9UQB8 552 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 LHFPL6Q9Y693 200 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 U3KQV3 271 aa10.52□□□□□ -0.73
SS18-225ENST00000585121 ISPDA4D126 451 aa10.51□□□□□ -0.73
SS18-225ENST00000585121 BHLHE40O14503 412 aa10.51□□□□□ -0.73
SS18-225ENST00000585121 GNGT2O14610 69 aa10.51□□□□□ -0.73
SS18-225ENST00000585121 WNT9BO14905 357 aa10.51□□□□□ -0.73
SS18-225ENST00000585121 IFNGP01579 166 aa10.51□□□□□ -0.73
SS18-225ENST00000585121 MSMBP08118 114 aa10.51□□□□□ -0.73
SS18-225ENST00000585121 CD55P08174 381 aa10.51□□□□□ -0.73
SS18-225ENST00000585121 DBHP09172 617 aa10.51□□□□□ -0.73
SS18-225ENST00000585121 SELEP16581 610 aa10.51□□□□□ -0.73
SS18-225ENST00000585121 RIPK1Q13546 671 aa10.51□□□□□ -0.73
SS18-225ENST00000585121 ACSM5Q6NUN0 579 aa10.51□□□□□ -0.73
SS18-225ENST00000585121 SLC27A4Q6P1M0 643 aa10.51□□□□□ -0.73
SS18-225ENST00000585121 OR2T33Q8NG76 320 aa10.51□□□□□ -0.73
SS18-225ENST00000585121 OR2Z1Q8NG97 314 aa10.51□□□□□ -0.73
SS18-225ENST00000585121 TMEM186Q96B77 213 aa10.51□□□□□ -0.73
SS18-225ENST00000585121 DGCR6LQ9BY27 220 aa10.51□□□□□ -0.73
SS18-225ENST00000585121 FN3KQ9H479 309 aa10.51□□□□□ -0.73
SS18-225ENST00000585121 POFUT1Q9H488 388 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms