RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 SRSF10O75494 262 aaKnown RBP13.35□□□□□ -0.27
SS18-215ENST00000580642 GABARAPO95166 117 aa13.35□□□□□ -0.27
SS18-215ENST00000580642 ISG15P05161 165 aa13.35□□□□□ -0.27
SS18-215ENST00000580642 HOXC12P31275 282 aa13.35□□□□□ -0.27
SS18-215ENST00000580642 PLP2Q04941 152 aa13.35□□□□□ -0.27
SS18-215ENST00000580642 SSX1Q16384 188 aa13.35□□□□□ -0.27
SS18-215ENST00000580642 SLC25A35Q3KQZ1 300 aa13.35□□□□□ -0.27
SS18-215ENST00000580642 YIF1BQ5BJH7 314 aa13.35□□□□□ -0.27
SS18-215ENST00000580642 LIPKQ5VXJ0 399 aa13.35□□□□□ -0.27
SS18-215ENST00000580642 DRAM2Q6UX65 266 aa13.35□□□□□ -0.27
SS18-215ENST00000580642 ZNF704Q6ZNC4 412 aaPredicted RBP13.35□□□□□ -0.27
SS18-215ENST00000580642 CLVS1Q8IUQ0 354 aaPredicted RBP13.35□□□□□ -0.27
SS18-215ENST00000580642 CCDC54Q8NEL0 328 aa13.35□□□□□ -0.27
SS18-215ENST00000580642 STEAP2Q8NFT2 490 aa13.35□□□□□ -0.27
SS18-215ENST00000580642 RNF166Q96A37 237 aaPredicted RBP13.35□□□□□ -0.27
SS18-215ENST00000580642 C4orf45Q96LM5 186 aa13.35□□□□□ -0.27
SS18-215ENST00000580642 OPN3Q9H1Y3 402 aaPredicted RBP13.35□□□□□ -0.27
SS18-215ENST00000580642 RNF121Q9H920 327 aa13.35□□□□□ -0.27
SS18-215ENST00000580642 SLC17A5Q9NRA2 495 aa13.35□□□□□ -0.27
SS18-215ENST00000580642 COQ3Q9NZJ6 369 aa13.35□□□□□ -0.27
SS18-215ENST00000580642 ZNF224Q9NZL3 707 aa13.35□□□□□ -0.27
SS18-215ENST00000580642 AMDHD2Q9Y303 409 aa13.35□□□□□ -0.27
SS18-215ENST00000580642 SF3B6Q9Y3B4 125 aaKnown RBP13.35□□□□□ -0.27
SS18-215ENST00000580642 ARHGAP21Q5T5U3 1957 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 TMEM269A0A1B0GVZ9 245 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 OR5H1A6NKK0 313 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 E9PI62 339 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 LOC110117498-PIK3R3F6TDL0 507 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 H3BSA7 217 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 CCL21O00585 134 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 DOK2O60496 412 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 WNT11O96014 354 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 CRYGSP22914 178 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 CHRNB4P30926 498 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 FGF9P31371 208 aaPredicted RBP13.34□□□□□ -0.27
SS18-215ENST00000580642 GDI2P50395 445 aaKnown RBP13.34□□□□□ -0.27
SS18-215ENST00000580642 FOXG1P55316 489 aaPredicted RBP13.34□□□□□ -0.27
SS18-215ENST00000580642 TPTEP56180 551 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 RAB1AP62820 205 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 GSG1Q2KHT4 349 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 C3orf36Q3SXR2 165 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 FBXL19-AS1Q494R0 122 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 TIMM23BQ5SRD1 257 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 GPR107Q5VW38 600 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 ZNF474Q6S9Z5 364 aaPredicted RBP13.34□□□□□ -0.27
SS18-215ENST00000580642 PAMR1Q6UXH9 720 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 BHLHA15Q7RTS1 189 aaPredicted RBP13.34□□□□□ -0.27
SS18-215ENST00000580642 CATSPERDQ86XM0 798 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 GHSRQ92847 366 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 PGLYRP3Q96LB9 341 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 COMMD4Q9H0A8 199 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 WNT5BQ9H1J7 359 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 RSL24D1Q9UHA3 163 aaKnown RBP13.34□□□□□ -0.27
SS18-215ENST00000580642 NUFIP1Q9UHK0 495 aaKnown RBP13.34□□□□□ -0.27
SS18-215ENST00000580642 ZNF391Q9UJN7 358 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 STUB1Q9UNE7 303 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 SLC5A6Q9Y289 635 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 ZNF281Q9Y2X9 895 aa13.34□□□□□ -0.27
SS18-215ENST00000580642 PHF3Q92576 2039 aaKnown RBP13.34□□□□□ -0.27
SS18-215ENST00000580642 ATRXP46100 2492 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 SHANK1Q9Y566 2161 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 A0A096LPE4 126 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 IQCMA0A1B0GVH7 501 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 TRDV1A0A1B0GX56 115 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 A0A1W2PPZ6 126 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 OR4C45A6NMZ5 311 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 B8ZZF3 427 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 J3QW42 95 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 PSMD9O00233 223 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 MAGEB4O15481 346 aaPredicted RBP13.33□□□□□ -0.28
SS18-215ENST00000580642 AIREO43918 545 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 GATBO75879 557 aaKnown RBP13.33□□□□□ -0.28
SS18-215ENST00000580642 RPP14O95059 124 aaKnown RBP13.33□□□□□ -0.28
SS18-215ENST00000580642 UBCP0CG48 685 aaKnown RBP13.33□□□□□ -0.28
SS18-215ENST00000580642 CBR1P16152 277 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 BMP5P22003 454 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 IL32P24001 234 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 GTF2A1P52655 376 aaPredicted RBP13.33□□□□□ -0.28
SS18-215ENST00000580642 DOC2BQ14184 412 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 PABPC1L2AQ5JQF8 200 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 C9orf135Q5VTT2 229 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 TMEM244Q5VVB8 128 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 OTPQ5XKR4 325 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 STAC2Q6ZMT1 411 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 CXorf67Q86X51 503 aaPredicted RBP13.33□□□□□ -0.28
SS18-215ENST00000580642 OR52H1Q8NGJ2 320 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 OR5AK2Q8NH90 309 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 LRRC46Q96FV0 321 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 TTTY10Q9BZA0 68 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 FAM206AQ9NX38 181 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 FRRS1LQ9P0K9 344 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 SSR3Q9UNL2 185 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 GSTK1Q9Y2Q3 226 aa13.33□□□□□ -0.28
SS18-215ENST00000580642 M0R135 149 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 SLC22A1O15245 554 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 RAD51DO75771 328 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 LYZL6O75951 148 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 HLA-HP01893 362 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 SERPINA5P05154 406 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 CD79AP11912 226 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms