RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 SLC36A3Q495N2 470 aa12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 CCDC92Q53HC0 331 aaPredicted RBP12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 AVPI1Q5T686 147 aa12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 RPL13AP3Q6NVV1 102 aa12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 PTCHD4Q6ZW05 846 aa12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 MUC20Q8N307 709 aaPredicted RBP12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 KLHL36Q8N4N3 616 aa12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 CELF2-AS1Q8N7Q2 184 aa12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 SLC26A10Q8NG04 563 aa12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 OR13G1Q8NGZ3 307 aa12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 ST7LQ8TDW4 575 aa12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 ERGIC1Q969X5 290 aa12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 ELAC2Q9BQ52 826 aaKnown RBP12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 RBM4Q9BWF3 364 aaKnown RBP12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 NTN4Q9HB63 628 aa12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 PATZ1Q9HBE1 687 aaKnown RBP12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 MSL2Q9HCI7 577 aa12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 COA3Q9Y2R0 106 aaPredicted RBP12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 STARD10Q9Y365 291 aa12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 IER3IP1Q9Y5U9 82 aa12.24□□□□□ -0.45
SMARCE1-216ENST00000580419 IQCF6A8MYZ5 107 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 F5H0A9 414 aaPredicted RBP12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 H7C1C5 153 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 TRIM77I1YAP6 450 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 VENTXO95231 258 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 GADD45GO95257 159 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 AVPP01185 164 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 GATA4P43694 442 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 GSSP48637 474 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 LCN6P62502 163 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 SF3A3Q12874 501 aaKnown RBP eCLIP12.23□□□□□ -0.455e-6■■■■■ 39.5
SMARCE1-216ENST00000580419 C1orf94Q6P1W5 598 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 Q6ZR03 302 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 OR8G5Q8NG78 346 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 CMBLQ96DG6 245 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 SIGLEC11Q96RL6 698 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 C1QTNF5Q9BXJ0 243 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 OCEL1Q9H607 264 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 LPAR2Q9HBW0 351 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 EGFL7Q9UHF1 273 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 IL20RAQ9UHF4 553 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 OPN4Q9UHM6 478 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 B9D1Q9UPM9 204 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 PPP1R3CQ9UQK1 317 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 LHFPL6Q9Y693 200 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 MGAM2Q2M2H8 2515 aa12.23□□□□□ -0.45
SMARCE1-216ENST00000580419 TMEM89A2RUT3 159 aa12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 PPP1R3DO95685 299 aa12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 FPR2P25090 351 aa12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 MDH2P40926 338 aaKnown RBP12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 SLC6A9P48067 706 aa12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 MNAT1P51948 309 aa12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 BTG1P62324 171 aa12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 OR6V1Q8N148 313 aa12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 ARHGAP24Q8N264 748 aa12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 MCUR1Q96AQ8 359 aa12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 ZMYND19Q96E35 227 aaPredicted RBP12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 GPA33Q99795 319 aa12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 SLC30A2Q9BRI3 323 aa12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 TRIM15Q9C019 465 aa12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 OR52D1Q9H346 318 aa12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 ZMAT3Q9HA38 289 aaKnown RBP12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 ADA2Q9NZK5 511 aa12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 CYB5R1Q9UHQ9 305 aa12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 LRCH1Q9Y2L9 728 aa12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 NOP16Q9Y3C1 178 aaKnown RBP12.22□□□□□ -0.45
SMARCE1-216ENST00000580419 TMEM178BH3BS89 294 aa12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 SOCS2O14508 198 aa12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 RER1O15258 196 aa12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 RENP00797 406 aa12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 SRP9P49458 86 aaKnown RBP12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 TSPAN31Q12999 210 aa12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 RSPO1Q2MKA7 263 aaPredicted RBP12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 FAM86B1Q8N7N1 296 aa12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 PLPP7Q8NBV4 271 aa12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 OR2Z1Q8NG97 314 aa12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 FANK1Q8TC84 345 aa12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 DVL3Q92997 716 aaPredicted RBP12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 NSMCE2Q96MF7 247 aa12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 ZNF582Q96NG8 517 aaPredicted RBP12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 ERMAPQ96PL5 475 aaPredicted RBP12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 OR2V2Q96R30 315 aa12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 SLC22A4Q9H015 551 aa12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 C7orf69Q9H7B7 122 aa12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 GCM1Q9NP62 436 aa12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 IL20Q9NYY1 176 aa12.21□□□□□ -0.45
SMARCE1-216ENST00000580419 LOC105371242A0A075B767 164 aa12.2□□□□□ -0.46
SMARCE1-216ENST00000580419 DCTN6O00399 190 aa12.2□□□□□ -0.46
SMARCE1-216ENST00000580419 FABP3P05413 133 aa12.2□□□□□ -0.46
SMARCE1-216ENST00000580419 ZNF12P17014 697 aa12.2□□□□□ -0.46
SMARCE1-216ENST00000580419 OTX1P32242 354 aaPredicted RBP12.2□□□□□ -0.46
SMARCE1-216ENST00000580419 GK3PQ14409 553 aa12.2□□□□□ -0.46
SMARCE1-216ENST00000580419 SLC18B1Q6NT16 456 aa12.2□□□□□ -0.46
SMARCE1-216ENST00000580419 ZNF620Q6ZNG0 422 aa12.2□□□□□ -0.46
SMARCE1-216ENST00000580419 PIGWQ7Z7B1 504 aa12.2□□□□□ -0.46
SMARCE1-216ENST00000580419 CPLX4Q7Z7G2 160 aa12.2□□□□□ -0.46
SMARCE1-216ENST00000580419 JAZF1Q86VZ6 243 aa12.2□□□□□ -0.46
SMARCE1-216ENST00000580419 C1orf87Q8N0U7 546 aa12.2□□□□□ -0.46
SMARCE1-216ENST00000580419 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.2□□□□□ -0.46
SMARCE1-216ENST00000580419 DEFB108BQ8NET1 73 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms