RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 COMMD3-BMI1R4GMX3 469 aa16.68■□□□□ 0.26
SS18-209ENST00000578595 C17orf100A8MU93 164 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 PRR23D1E9PI22 279 aaPredicted RBP16.67■□□□□ 0.26
SS18-209ENST00000578595 G3V2T6 193 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 SPRY3O43610 288 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 PRR23D2P0DMB1 279 aaPredicted RBP16.67■□□□□ 0.26
SS18-209ENST00000578595 MAGEB1P43366 347 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 RGS6P49758 472 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 ENTPD1P49961 510 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 ZNF81P51508 661 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 SLC25A1P53007 311 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 CCL8P80075 99 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 TSTQ16762 297 aaKnown RBP16.67■□□□□ 0.26
SS18-209ENST00000578595 ZNF362Q5T0B9 420 aaPredicted RBP16.67■□□□□ 0.26
SS18-209ENST00000578595 HIPK1Q86Z02 1210 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 ZNF511Q8NB15 262 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 ZNRF4Q8WWF5 429 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 DNAJC9Q8WXX5 260 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 LRTOMTQ8WZ04 291 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 GTF3AQ92664 365 aaKnown RBP16.67■□□□□ 0.26
SS18-209ENST00000578595 UTP4Q969X6 686 aaKnown RBP16.67■□□□□ 0.26
SS18-209ENST00000578595 BPESC1Q9GZL8 116 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 SEMA6AQ9H2E6 1030 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 POFUT1Q9H488 388 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 WDR76Q9H967 626 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 KRT84Q9NSB2 600 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 DECR2Q9NUI1 292 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 TBCCD1Q9NVR7 557 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 PTTG3PQ9NZH4 202 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 CYB5R1Q9UHQ9 305 aa16.67■□□□□ 0.26
SS18-209ENST00000578595 TANC2Q9HCD6 1990 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 IGHV3-13P01766 116 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 HPXP02790 462 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 HMGN1P05114 100 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 USF1P22415 310 aaPredicted RBP16.66■□□□□ 0.26
SS18-209ENST00000578595 GGT2P36268 569 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 SLC6A9P48067 706 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 RPS7P62081 194 aaKnown RBP16.66■□□□□ 0.26
SS18-209ENST00000578595 TAF13Q15543 124 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 KLHL12Q53G59 568 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 MBNL2Q5VZF2 373 aaKnown RBP16.66■□□□□ 0.26
SS18-209ENST00000578595 TMEM236Q5W0B7 351 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 ACSM5Q6NUN0 579 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 PLBD1Q6P4A8 553 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 DCXRQ7Z4W1 244 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 ZDHHC13Q8IUH4 622 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 ERI1Q8IV48 349 aaKnown RBP16.66■□□□□ 0.26
SS18-209ENST00000578595 OR5L1Q8NGL2 311 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 OR6N2Q8NGY6 317 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 PYDC1Q8WXC3 89 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 COG8Q96MW5 612 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 DCLRE1CQ96SD1 692 aaKnown RBP16.66■□□□□ 0.26
SS18-209ENST00000578595 DDOQ99489 341 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 STARD10Q9Y365 291 aa16.66■□□□□ 0.26
SS18-209ENST00000578595 H3BSA7 217 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 NCR1O76036 304 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 NR4A2P43354 598 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 DAPP51397 102 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 BLVRAP53004 296 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 HIST1H3AP68431 136 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 PPP2R2BQ00005 443 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 ECH1Q13011 328 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 PCGF3Q3KNV8 242 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 HIST2H3PS2Q5TEC6 136 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 HIST2H3AQ71DI3 136 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 SPATC1Q76KD6 591 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 ZNF786Q8N393 782 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 ZNF540Q8NDQ6 660 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 APOBEC3DQ96AK3 386 aaPredicted RBP16.65■□□□□ 0.26
SS18-209ENST00000578595 COPS4Q9BT78 406 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 HCAR1Q9BXC0 346 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 NMNAT2Q9BZQ4 307 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 CENPMQ9NSP4 180 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 MALRD1Q5VYJ5 2156 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 DYSFO75923 2080 aa16.65■□□□□ 0.26
SS18-209ENST00000578595 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.64■□□□□ 0.258e-11■■■■■ 40.5
SS18-209ENST00000578595 SAC3D1A6NKF1 404 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 ZNF593O00488 134 aaPredicted RBP16.64■□□□□ 0.25
SS18-209ENST00000578595 SURF4O15260 269 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 ICMTO60725 284 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 CDC14BO60729 498 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 CRISP1P54107 249 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 TPTEP56180 551 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 RIPPLY3P57055 190 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 KPNB1Q14974 876 aaKnown RBP16.64■□□□□ 0.25
SS18-209ENST00000578595 SNAPC1Q16533 368 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 ZMAT1Q5H9K5 638 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 OR5AS1Q8N127 324 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 RDH5Q92781 318 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 SPTSSAQ969W0 71 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 CMBLQ96DG6 245 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 MAP6Q96JE9 813 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 INTS14Q96SY0 518 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 PRRG3Q9BZD7 231 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 SAP30LQ9HAJ7 183 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 MSL2Q9HCI7 577 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 TVP23BQ9NYZ1 205 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 N6AMT1Q9Y5N5 214 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 NAV3Q8IVL0 2385 aa16.64■□□□□ 0.25
SS18-209ENST00000578595 ABCA2Q9BZC7 2435 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms