RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ZNF575Q86XF7 245 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 CMTM1Q8IZ96 169 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 IQCF1Q8N6M8 205 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 FBXL13Q8NEE6 735 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 OR5B3Q8NH48 314 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 SPPL2AQ8TCT8 520 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 MYDGFQ969H8 173 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 C11orf52Q96A22 123 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 FAM131CQ96AQ9 280 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 MS4A14Q96JA4 679 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 OXGR1Q96P68 337 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 OPALINQ96PE5 141 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 ZNF300Q96RE9 604 aaPredicted RBP4.68□□□□□ -1.66
VPS53-219ENST00000576019 C1QTNF4Q9BXJ3 329 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 DGCR6LQ9BY27 220 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 ACTR3CQ9C0K3 210 aaPredicted RBP4.68□□□□□ -1.66
VPS53-219ENST00000576019 NDEL1Q9GZM8 345 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 PPDPFQ9H3Y8 114 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 GOLPH3Q9H4A6 298 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 TMEM165Q9HC07 324 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 B3GAT2Q9NPZ5 323 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 ZC4H2Q9NQZ6 224 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 THYN1Q9P016 225 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 DEC1Q9P2X7 70 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 WARS2Q9UGM6 360 aaKnown RBP4.68□□□□□ -1.66
VPS53-219ENST00000576019 POFUT2Q9Y2G5 429 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 ATP6V1DQ9Y5K8 247 aa4.68□□□□□ -1.66
VPS53-219ENST00000576019 NCOA6Q14686 2063 aaPredicted RBP4.68□□□□□ -1.66
VPS53-219ENST00000576019 OR5B21A6NL26 309 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 SMIM1B2RUZ4 78 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 PCDH7O60245 1069 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 CDK14O94921 469 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 FARS2O95363 451 aaKnown RBP4.67□□□□□ -1.66
VPS53-219ENST00000576019 ETHE1O95571 254 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 IGHV3-9P01782 118 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 PRSS1P07477 247 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 IL12BP29460 328 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 HTR1FP30939 366 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 ERVK-16P61578 105 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 VLDLRP98155 873 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 GABRA6Q16445 453 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 DGUOKQ16854 277 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 ZNF672Q499Z4 452 aaPredicted RBP4.67□□□□□ -1.66
VPS53-219ENST00000576019 OR2G6Q5TZ20 316 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 STUMQ69YW2 141 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 Q6ZRP5 223 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 CARM1Q86X55 608 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 ACOT4Q8N9L9 421 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 OR56A4Q8NGH8 313 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 OR10G7Q8NGN6 311 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 OR1S2Q8NGQ3 325 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 LYPD6BQ8NI32 183 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 NABP1Q96AH0 204 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 TMEM80Q96HE8 168 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 ECSITQ9BQ95 431 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 WDR13Q9H1Z4 485 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 LRTM1Q9HBL6 345 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 MRPL40Q9NQ50 206 aaKnown RBP4.67□□□□□ -1.66
VPS53-219ENST00000576019 EHFQ9NZC4 300 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 MGAT4AQ9UM21 535 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 SLC22A14Q9Y267 594 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 SLC17A4Q9Y2C5 497 aa4.67□□□□□ -1.66
VPS53-219ENST00000576019 NOTCH3Q9UM47 2321 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 TRAV19A0A0A6YYK7 116 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 IGHV3-38A0A0C4DH36 116 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 TEX48A0A1B0GUV7 120 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 A0A1W2PRD5 423 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 E7ESA3 106 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 NDUFAB1O14561 156 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 GPAA1O43292 621 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 CALUO43852 315 aaPredicted RBP4.66□□□□□ -1.66
VPS53-219ENST00000576019 ENTPD5O75356 428 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 HSBP1O75506 76 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 HLA-HP01893 362 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 KRT16P08779 473 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 OR4Q2P0C623 313 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 PRSS56P0CW18 603 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 HMGA1P17096 107 aaKnown RBP4.66□□□□□ -1.66
VPS53-219ENST00000576019 VHLP40337 213 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 SLC26A3P40879 764 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 NR4A2P43354 598 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 ATP4BP51164 291 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 MYL6P60660 151 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 RPS15AP62244 130 aaKnown RBP4.66□□□□□ -1.66
VPS53-219ENST00000576019 PUDPQ08623 228 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 TWIST1Q15672 202 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 DEFB113Q30KQ7 82 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 C18orf21Q32NC0 220 aaPredicted RBP4.66□□□□□ -1.66
VPS53-219ENST00000576019 SAMD4BQ5PRF9 694 aaKnown RBP4.66□□□□□ -1.66
VPS53-219ENST00000576019 LCLAT1Q6UWP7 414 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 TRMT10CQ7L0Y3 403 aaKnown RBP4.66□□□□□ -1.66
VPS53-219ENST00000576019 PID1Q7Z2X4 250 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 HIPK1Q86Z02 1210 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 C11orf45Q8TAV5 145 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 SLC7A13Q8TCU3 470 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 TCTEX1D2Q8WW35 142 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 CRYGNQ8WXF5 182 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 ISOC2Q96AB3 205 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 C8orf76Q96K31 380 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 ART5Q96L15 291 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms