RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 IL17DQ8TAD2 202 aa12.96□□□□□ -0.33
VPS53-218ENST00000575207 ZNF649Q9BS31 505 aa12.96□□□□□ -0.33
VPS53-218ENST00000575207 SLC35A5Q9BS91 424 aa12.96□□□□□ -0.33
VPS53-218ENST00000575207 MEAF6Q9HAF1 191 aa12.96□□□□□ -0.33
VPS53-218ENST00000575207 A0A1B0GWA3 101 aa12.95□□□□□ -0.34
VPS53-218ENST00000575207 OR6A2O95222 327 aa12.95□□□□□ -0.34
VPS53-218ENST00000575207 MYL2P10916 166 aa12.95□□□□□ -0.34
VPS53-218ENST00000575207 OR8B8Q15620 311 aa12.95□□□□□ -0.34
VPS53-218ENST00000575207 NPTX1Q15818 432 aa12.95□□□□□ -0.34
VPS53-218ENST00000575207 INTS11Q5TA45 600 aaKnown RBP12.95□□□□□ -0.34
VPS53-218ENST00000575207 KANK2Q63ZY3 851 aa12.95□□□□□ -0.34
VPS53-218ENST00000575207 HOMEZQ8IX15 550 aa12.95□□□□□ -0.34
VPS53-218ENST00000575207 OR5J2Q8NH18 312 aa12.95□□□□□ -0.34
VPS53-218ENST00000575207 ZNF582Q96NG8 517 aaPredicted RBP12.95□□□□□ -0.34
VPS53-218ENST00000575207 METTL8Q9H825 291 aaKnown RBP12.95□□□□□ -0.34
VPS53-218ENST00000575207 RNF7Q9UBF6 113 aa12.95□□□□□ -0.34
VPS53-218ENST00000575207 ZNF180Q9UJW8 692 aa12.95□□□□□ -0.34
VPS53-218ENST00000575207 OOEPA6NGQ2 149 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 G3V2L1 256 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 LY6G6CO95867 125 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 GYPAP02724 150 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 SNRPAP09012 282 aaKnown RBP12.94□□□□□ -0.34
VPS53-218ENST00000575207 G6PDP11413 515 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 TXNL4AP83876 142 aaKnown RBP12.94□□□□□ -0.34
VPS53-218ENST00000575207 SGCAQ16586 387 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 C10orf128Q5T292 105 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 C9orf66Q5T8R8 295 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 FAM27BQ5VT28 67 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 ZYG11AQ6WRX3 759 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 CREG2Q8IUH2 290 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 BOLLQ8N9W6 283 aaKnown RBP12.94□□□□□ -0.34
VPS53-218ENST00000575207 NOXO1Q8NFA2 376 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 TWIST2Q8WVJ9 160 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 DNAJA4Q8WW22 397 aaPredicted RBP12.94□□□□□ -0.34
VPS53-218ENST00000575207 COG8Q96MW5 612 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 SEPHS2Q99611 448 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 SCOCQ9UIL1 159 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 ZNF232Q9UNY5 417 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 TIMM10BQ9Y5J6 103 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 VPS13DQ5THJ4 4388 aa12.94□□□□□ -0.34
VPS53-218ENST00000575207 PRSS51A0A1B0GVH4 220 aa12.93□□□□□ -0.34
VPS53-218ENST00000575207 GOLGA6L6A8MZA4 724 aa12.93□□□□□ -0.34
VPS53-218ENST00000575207 MAPK11Q15759 364 aa12.93□□□□□ -0.34
VPS53-218ENST00000575207 CEP85LQ5SZL2 805 aa12.93□□□□□ -0.34
VPS53-218ENST00000575207 OR2T2Q6IF00 324 aa12.93□□□□□ -0.34
VPS53-218ENST00000575207 ZDHHC24Q6UX98 284 aa12.93□□□□□ -0.34
VPS53-218ENST00000575207 TMEM219Q86XT9 240 aa12.93□□□□□ -0.34
VPS53-218ENST00000575207 C10orf111Q8N326 155 aa12.93□□□□□ -0.34
VPS53-218ENST00000575207 LSMEM1Q8N8F7 131 aa12.93□□□□□ -0.34
VPS53-218ENST00000575207 FNDC5Q8NAU1 212 aa12.93□□□□□ -0.34
VPS53-218ENST00000575207 OR8J2Q8NGG1 315 aa12.93□□□□□ -0.34
VPS53-218ENST00000575207 OR52H1Q8NGJ2 320 aa12.93□□□□□ -0.34
VPS53-218ENST00000575207 SLC35B4Q969S0 331 aa12.93□□□□□ -0.34
VPS53-218ENST00000575207 CCDC115Q96NT0 180 aa12.93□□□□□ -0.34
VPS53-218ENST00000575207 ECSITQ9BQ95 431 aa12.93□□□□□ -0.34
VPS53-218ENST00000575207 MRPL13Q9BYD1 178 aaKnown RBP12.93□□□□□ -0.34
VPS53-218ENST00000575207 UFSP2Q9NUQ7 469 aa12.93□□□□□ -0.34
VPS53-218ENST00000575207 PITPNC1Q9UKF7 332 aa12.93□□□□□ -0.34
VPS53-218ENST00000575207 UGT2A1Q9Y4X1 527 aa12.93□□□□□ -0.34
VPS53-218ENST00000575207 M0R1W7 72 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 RNF13O43567 381 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 MT-ATP6P00846 226 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 SERPINE1P05121 402 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 ETFAP13804 333 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 SLC6A1P30531 599 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 CD200P41217 278 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 CLDN8P56748 225 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 DNAJB13P59910 316 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 MPPED2Q15777 294 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 C6orf136Q5SQH8 315 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 C10orf99Q6UWK7 81 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 FBXW12Q6X9E4 464 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 COLCA1Q6ZS62 124 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 FAM90A1Q86YD7 464 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 C11orf42Q8N5U0 333 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 CLDN22Q8N7P3 220 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 CACYBPQ9HB71 228 aaKnown RBP12.92□□□□□ -0.34
VPS53-218ENST00000575207 NINJ2Q9NZG7 142 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 CALML5Q9NZT1 146 aa12.92□□□□□ -0.34
VPS53-218ENST00000575207 DNAH11Q96DT5 4516 aa12.91□□□□□ -0.34
VPS53-218ENST00000575207 SLC2A10O95528 541 aa12.91□□□□□ -0.34
VPS53-218ENST00000575207 HLA-DPB1P04440 258 aa12.91□□□□□ -0.34
VPS53-218ENST00000575207 COX5BP10606 129 aa12.91□□□□□ -0.34
VPS53-218ENST00000575207 FPR3P25089 353 aa12.91□□□□□ -0.34
VPS53-218ENST00000575207 HTR2AP28223 471 aa12.91□□□□□ -0.34
VPS53-218ENST00000575207 ECHS1P30084 290 aa12.91□□□□□ -0.34
VPS53-218ENST00000575207 CDC25BP30305 580 aa12.91□□□□□ -0.34
VPS53-218ENST00000575207 PCBD1P61457 104 aa12.91□□□□□ -0.34
VPS53-218ENST00000575207 ANXA8L1Q5VT79 327 aa12.91□□□□□ -0.34
VPS53-218ENST00000575207 PRAMEF6Q5VXH4 476 aa12.91□□□□□ -0.34
VPS53-218ENST00000575207 ULK3Q6PHR2 472 aa12.91□□□□□ -0.34
VPS53-218ENST00000575207 BHLHE23Q8NDY6 225 aa12.91□□□□□ -0.34
VPS53-218ENST00000575207 FUT8Q9BYC5 575 aa12.91□□□□□ -0.34
VPS53-218ENST00000575207 TAS2R5Q9NYW4 299 aa12.91□□□□□ -0.34
VPS53-218ENST00000575207 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.91□□□□□ -0.34
VPS53-218ENST00000575207 CENPBD1B2RD01 187 aa12.9□□□□□ -0.34
VPS53-218ENST00000575207 TMEM233B4DJY2 109 aa12.9□□□□□ -0.34
VPS53-218ENST00000575207 LDLRAD4O15165 306 aa12.9□□□□□ -0.34
VPS53-218ENST00000575207 CST2P09228 141 aa12.9□□□□□ -0.34
VPS53-218ENST00000575207 RAB13P51153 203 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms