RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 LINC01590Q5TEZ4 76 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 LCN1P1Q5VSP4 162 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 SHEQ5VZ18 495 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 C11orf71Q6IPW1 123 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 CORO6Q6QEF8 472 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 PRSS57Q6UWY2 283 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 LINC00346Q8IVM7 164 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 GID4Q8IVV7 300 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 PAQR4Q8N4S7 273 aaPredicted RBP9.5□□□□□ -0.89
CHD3-216ENST00000573936 TCEANCQ8N8B7 351 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 WFDC11Q8NEX6 87 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 OR1J1Q8NGS3 322 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 TMEM163Q8TC26 289 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 ZNRF4Q8WWF5 429 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 TRUB1Q8WWH5 349 aaKnown RBP9.5□□□□□ -0.89
CHD3-216ENST00000573936 MRPL24Q96A35 216 aaKnown RBP9.5□□□□□ -0.89
CHD3-216ENST00000573936 SMR3AQ99954 134 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 HCAR1Q9BXC0 346 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 CACNG6Q9BXT2 260 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 PLK3Q9H4B4 646 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 MARCH7Q9H992 704 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 TBCCD1Q9NVR7 557 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 GPR160Q9UJ42 338 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 COMMD3-BMI1R4GMX3 469 aa9.5□□□□□ -0.89
CHD3-216ENST00000573936 RAI1Q7Z5J4 1906 aaPredicted RBP9.5□□□□□ -0.89
CHD3-216ENST00000573936 FN1P02751 2386 aaKnown RBP9.49□□□□□ -0.89
CHD3-216ENST00000573936 H7C417 338 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 PRKYO43930 277 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 ERCC1P07992 297 aaPredicted RBP9.49□□□□□ -0.89
CHD3-216ENST00000573936 SPARCP09486 303 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 FAM157BP0CG42 384 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 EPHA2P29317 976 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 GCH1P30793 250 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 POLR2IP36954 125 aaKnown RBP9.49□□□□□ -0.89
CHD3-216ENST00000573936 VHLP40337 213 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 NUDT6P53370 316 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 APOFQ13790 326 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 MST1LQ2TV78 715 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 ZNF718Q3SXZ3 478 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 NXNL2Q5VZ03 156 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 OTPQ5XKR4 325 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 TMEM154Q6P9G4 183 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 CFAP77Q6ZQR2 320 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 DCXRQ7Z4W1 244 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 ERI1Q8IV48 349 aaKnown RBP9.49□□□□□ -0.89
CHD3-216ENST00000573936 OR5L1Q8NGL2 311 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 OR8J1Q8NGP2 316 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 OR6N2Q8NGY6 317 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 SYNPRQ8TBG9 265 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 SPTSSAQ969W0 71 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 ZMYND19Q96E35 227 aaPredicted RBP9.49□□□□□ -0.89
CHD3-216ENST00000573936 HRASLS5Q96KN8 279 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 RDH12Q96NR8 316 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 MBOAT4Q96T53 435 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 TEAD3Q99594 435 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 ATF6BQ99941 703 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 REPIN1Q9BWE0 567 aaKnown RBP9.49□□□□□ -0.89
CHD3-216ENST00000573936 VCX3BQ9H321 246 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 WDR76Q9H967 626 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 BARX1Q9HBU1 254 aaPredicted RBP9.49□□□□□ -0.89
CHD3-216ENST00000573936 IMPAD1Q9NX62 359 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 SLCO1C1Q9NYB5 712 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 GRIP1Q9Y3R0 1128 aa9.49□□□□□ -0.89
CHD3-216ENST00000573936 PRR14LQ5THK1 2151 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 ARID1AO14497 2285 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 TMEM129A0AVI4 362 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 SLC22A31A6NKX4 558 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 ZNF878C9JN71 531 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 GPRIN2O60269 458 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 ZNF250P15622 560 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 SLC2A5P22732 501 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 CDKN1AP38936 164 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 WNT5AP41221 380 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 SLC15A1P46059 708 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 PPOXP50336 477 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 AQP4P55087 323 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 ATP5J2P56134 94 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 TPTEP56180 551 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 KLF3P57682 345 aaPredicted RBP9.48□□□□□ -0.89
CHD3-216ENST00000573936 PPP1CBP62140 327 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 DBPQ10586 325 aaPredicted RBP9.48□□□□□ -0.89
CHD3-216ENST00000573936 EIF2B1Q14232 305 aaKnown RBP9.48□□□□□ -0.89
CHD3-216ENST00000573936 TAF13Q15543 124 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 ZIK1Q3SY52 487 aaPredicted RBP9.48□□□□□ -0.89
CHD3-216ENST00000573936 AADACL4Q5VUY2 407 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 MBNL2Q5VZF2 373 aaKnown RBP9.48□□□□□ -0.89
CHD3-216ENST00000573936 LYPD4Q6UWN0 246 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 RHOUQ7L0Q8 258 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 MEPCEQ7L2J0 689 aaKnown RBP9.48□□□□□ -0.89
CHD3-216ENST00000573936 TIGD4Q8IY51 512 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 ZNF454Q8N9F8 522 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 BBS1Q8NFJ9 593 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 ABHD4Q8TB40 342 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 PERPQ96FX8 193 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 IL4I1Q96RQ9 567 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 DOK1Q99704 481 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 MRPL37Q9BZE1 423 aaKnown RBP9.48□□□□□ -0.89
CHD3-216ENST00000573936 YIPF3Q9GZM5 350 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 VCXQ9H320 206 aa9.48□□□□□ -0.89
CHD3-216ENST00000573936 OR51B6Q9H340 312 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms